Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56570 666 / 0 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 358 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 363 / 7e-115 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 360 / 8e-114 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 355 / 1e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 363 / 2e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 355 / 2e-112 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 350 / 4e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 346 / 3e-109 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 342 / 6e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014027 [exp] 637 / 0 AT1G56570 399 / 1e-135 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014026 [exp] 460 / 3e-161 AT1G56570 258 / 8e-83 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 368 / 1e-116 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 357 / 3e-113 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 358 / 1e-111 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 352 / 1e-111 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 349 / 8e-111 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 349 / 2e-110 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 359 / 3e-110 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006700 [exp] 769 / 0 AT1G56570 732 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G010900 [exp] 707 / 0 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 385 / 5e-125 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 387 / 2e-123 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 377 / 3e-120 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G151200 [exp] 364 / 2e-116 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G155000 [exp] 364 / 2e-116 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 366 / 5e-116 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 363 / 1e-115 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 367 / 1e-114 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019891 pacid=23164047 polypeptide=Lus10019891 locus=Lus10019891.g ID=Lus10019891.BGIv1.0 annot-version=v1.0 ATGGCAGGGAAGGGTCACCACAAAAACAGCTGCCATCACCATTATCATGTCCATTCGCTAGTTATGCGATATCCACGGCAACTTTCGGCTCTTCGCTCGC AACCGCTATCAACGTTCGCTGAAGATTATCTACAATGGACCCAAGCCAACCATACGGTGTTTGCACCAAAGGGTCCCTCAGTATTAGCCACCAACCTCAT CAAGTCGTATTTTGAAAACGGTTCAGTTGACGATGCTCACGACCTGTTCGACGAAATGCCTGACAGAGATGTTGTCGCCTGGACGTCCATGGTCGCTGGC TACGCTTCCCGCAACCAAAACTGGCGGGCTTGGAGGGTTTTCTGCGACATGGTTAAGAATGGGATTGTGCCCAATGCCTTCACCTTTTCCAGCGTTTTGA AGGTTTGCAAAGGTATGAAGGATGTTTCTCGTGGCAGCTTAGTTCATGGTTCGGTCATAAAGCGTGGGATTGAAGGGTTCATTTACGTGGACAATTCGCT CATGGATATGTATGCTACTTGTTGTGCTAGCATGAAAGATGCTTGCTTGGTTTTTCGTCATATTAGAGAAAAGAATGAAGTCTCGTGGAAAACGTTTGCA TTTGGCTCGCAGGAGGAACCGGAACTTAACCCTTACAGCCTTTCTATTGCTGTTAGAGCTTGTGCTTCAACCGGATCGCAAAACAGTGGCAGACAAATAC AGGCGGCAACGATCAAACATGGGTTTGAATCTAACCTTCCTGTCATGAACTCCATACTAGATATGTACTGTAGGCTTGTTTGTTTACCTGAGGCAAACCA GTGTTTCAATGAAATGAGTGAAAAGGATTTGATTACATGGAATACTCTAATATCAGGATATGAAAAGTGGGATTCCAATCTGTCACTCTCCATATTCTCC AGAATGGAATCAGAAGGTTTTACTCCAAATTGCTTCACGTTTACCAGTGTAACTGCAGCCTGTGCTAATCTGGCGGTTCTGAGTTGTGGGCAACAGGTTC ATGGAGGAATTATTCGCAGAGGAATCAGTAGTAACTTGGCATTGGCTAATGCTTTGATAGACATGTATGCCAAGTGTGGTAGTATAAGTGAGGCACATAA AATTTTCAGTGAAATGTCTTCCAGAGATTTGGTTTCCTGGACATCTATGATGATTGGATATGGGGCTCATGGATATGGTAAAGAGGCTGTAGCGTTGTTT GAGGAGATGGTTAGGTCAGATGTCAGGCCTGATCAGATAGTGTTTATGGCGGTCTTGAGTTCTTGTAGTCATGCTGGACTAGTTGACCAGGGACTGAGGT ATTTCAATTCTATGATTGGTCACTACAAAATTAGGCCAAATCAGGAAATTTATGGGTGTGTTGTGGATTTGTTGGGCAGAGCTGGGAGGGTTGAGGAGGC CTATCAGCTGATACACAGCATGCCATTTAAAGCTGACGAATCTGTTTGGGGTGCGCTCCTTAGCGCCTGTAAAACCCATAACCTTCTAGATTTGGGTAAA TTAGCTGCCTTGAGGGTGTTGGATTTGCAGCCAGATATGGTCAGTACTTATGTCATGCTGTCAAATATTTATGCAGCCGAAGGTAGATGGGACGAGTTTG CGAGGACAAGGAGATTGATGAAGGAAATTATGAGCAAGAAGGTTTCGGGCAAGAGTTGGATTGAAGTAAGAAACGAAGTATACAGTTTTGTCGTGGATGA TACAGTTGGCATTCATATGGAGTTGGCACATCGAACTCTAGGTCTGTTATGGCAGCACATGAAAGAAAAAGATAATATGGATGAAGAGGACTGCTTAATA GATGCCATTGCAAATGGGGCTTGA
AA sequence Show only first row Show all	>Lus10019891 pacid=23164047 polypeptide=Lus10019891 locus=Lus10019891.g ID=Lus10019891.BGIv1.0 annot-version=v1.0 MAGKGHHKNSCHHHYHVHSLVMRYPRQLSALRSQPLSTFAEDYLQWTQANHTVFAPKGPSVLATNLIKSYFENGSVDDAHDLFDEMPDRDVVAWTSMVAG YASRNQNWRAWRVFCDMVKNGIVPNAFTFSSVLKVCKGMKDVSRGSLVHGSVIKRGIEGFIYVDNSLMDMYATCCASMKDACLVFRHIREKNEVSWKTFA FGSQEEPELNPYSLSIAVRACASTGSQNSGRQIQAATIKHGFESNLPVMNSILDMYCRLVCLPEANQCFNEMSEKDLITWNTLISGYEKWDSNLSLSIFS RMESEGFTPNCFTFTSVTAACANLAVLSCGQQVHGGIIRRGISSNLALANALIDMYAKCGSISEAHKIFSEMSSRDLVSWTSMMIGYGAHGYGKEAVALF EEMVRSDVRPDQIVFMAVLSSCSHAGLVDQGLRYFNSMIGHYKIRPNQEIYGCVVDLLGRAGRVEEAYQLIHSMPFKADESVWGALLSACKTHNLLDLGK LAALRVLDLQPDMVSTYVMLSNIYAAEGRWDEFARTRRLMKEIMSKKVSGKSWIEVRNEVYSFVVDDTVGIHMELAHRTLGLLWQHMKEKDNMDEEDCLI DAIANGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	0	1
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	2.6	0.7315
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	4.5	0.7500
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	4.9	0.7891
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	6.3	0.7354
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	9.8	0.6787
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	16.3	0.7469
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10004081 [exp]	17.2	0.7280
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	18.4	0.7030
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	19.0	0.6940
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	19.4	0.6979

Compare expression of checked genes

Lus10019891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.