Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15760 175 / 6e-52 Protein of unknown function (DUF1645) (.1) AT2G26530 92 / 1e-20 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT3G62630 82 / 5e-17 Protein of unknown function (DUF1645) (.1) AT3G27880 43 / 0.0002 Protein of unknown function (DUF1645) (.1) AT1G70420 42 / 0.0003 Protein of unknown function (DUF1645) (.1) AT1G23710 41 / 0.0007 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014025 [exp] 569 / 0 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10012069 [exp] 232 / 6e-74 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 223 / 4e-70 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10032766 [exp] 132 / 2e-35 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10021757 [exp] 125 / 2e-32 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10006479 [exp] 86 / 8e-19 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032881 [exp] 84 / 7e-18 AT2G26530 129 / 2e-35 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10029855 [exp] 82 / 7e-17 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1) Lus10020690 [exp] 81 / 9e-17 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143500 [exp] 252 / 4e-81 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.009G105400 [exp] 244 / 8e-78 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.014G034900 [exp] 129 / 5e-34 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.002G128500 [exp] 128 / 1e-33 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.013G010400 [exp] 86 / 3e-18 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 84 / 8e-18 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 41 / 0.0008 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10019892 pacid=23164067 polypeptide=Lus10019892 locus=Lus10019892.g ID=Lus10019892.BGIv1.0 annot-version=v1.0 ATGGAGGTAGTATTGCCAATACCGCCACCTTCCGCCGCCACTGCGACGGAGTTCAACTTCGACAGCTCTTGCTCTACCCCTTACATCACCGCTCCTTCCA CCCCTCAACGATTAGCCACCAACTTCTCTTCCTCTTCCTCCGTCGCCGGCGGCGGCGTTCCTTTCGAGTGGGAAGAGAAGCCCGGAACTCCCAAGAGAAA CGGAACAAGATCCAAGAGTACGGAATTCTACGAAGACGACGACGATGATTTCGAATTTGATTTCAGCGGCCAGTTGTCCAGGAGCTCTTTGTCCGCCGCC GATGAGCTTTTCTACGGTGGCAAGATCCGGCCGCTGAAACCTCCTCCGGGGTATGAATCCTCCGCCACCTCTCCCCGGTCGCCGAAATCGAATTCGAAAT TGAATAAGAAGAAGGAATTCGATCCTTTCCAGGCTGCGATTGACGAGACGCGGAATCGTGACGATAAACAAGAATTGGACCAGCGAGGAAGAGAAAGGAG AGCGATTAATTCTTCTTCCTCCGCAGATTGTGATCCTAATTTCAGTTCTCATGCCGCTCACGCCGGCGGTCGGCGGGGAATTAGTAGGTCGATGTCGCCT ATGAGAGTCTCCGGCGAAATGTTGGTTGATGACAGCGCCACGTCATCGTCAGGGACCACCGGTAAACAGTCGTACGCAGCGGCTTTTCTGTCGGCGATCT CGTTTTCGAAAGGAGGAAGGCCGTACAAGAAGTGGAAGCTGAGGGATTTGTTGCTGTTCAGGAGCGCGTCGGAAGGGAGGGCGACGAGTTTCCGGTCGTC GGAGATCAAGTACGCGGTGCTGTCGAGGAAGTCGGAGTCAACATTGGCGGCGGCGGAAGATGCGAAGACTTCAAGCTTCCGGTCAACGGAGAGTTTGGGG AGCTCGCGGCGGATGAGGGCGGCGGTGTCGGCGCATGAGATACATTACACGAAAAACAGAGCGGCGGCGGAGGAGATGAGGAGGAAAACTTTCCTACCGT ATAAACAGGGTTTGTTGGGGTGTTTGGGATTCAGTCCGGGAGGGATCCCTGACATTTCCTGCTCCAGAGGCGTTGGATCTTTGCCACGTGGATAA
AA sequence Show only first row Show all	>Lus10019892 pacid=23164067 polypeptide=Lus10019892 locus=Lus10019892.g ID=Lus10019892.BGIv1.0 annot-version=v1.0 MEVVLPIPPPSAATATEFNFDSSCSTPYITAPSTPQRLATNFSSSSSVAGGGVPFEWEEKPGTPKRNGTRSKSTEFYEDDDDDFEFDFSGQLSRSSLSAA DELFYGGKIRPLKPPPGYESSATSPRSPKSNSKLNKKKEFDPFQAAIDETRNRDDKQELDQRGRERRAINSSSSADCDPNFSSHAAHAGGRRGISRSMSP MRVSGEMLVDDSATSSSGTTGKQSYAAAFLSAISFSKGGRPYKKWKLRDLLLFRSASEGRATSFRSSEIKYAVLSRKSESTLAAAEDAKTSSFRSTESLG SSRRMRAAVSAHEIHYTKNRAAAEEMRRKTFLPYKQGLLGCLGFSPGGIPDISCSRGVGSLPRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15760			Protein of unknown function (D...		Lus10019892 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	12.8	0.9361
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10024107 [exp]	14.8	0.8811
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	21.6	0.9200
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	26.2	0.9102
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	26.3	0.9007
AT4G12070			unknown protein		Lus10031257 [exp]	27.0	0.8872
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10005262 [exp]	34.2	0.9111
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	40.2	0.8833
					Lus10020455 [exp]	44.8	0.9083
AT4G12070			unknown protein		Lus10031828 [exp]	47.3	0.8762

Compare expression of checked genes

Lus10019892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.