Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12620 470 / 1e-166 Protein phosphatase 2C family protein (.1.2) AT3G55050 463 / 7e-164 Protein phosphatase 2C family protein (.1.2) AT3G51370 446 / 3e-157 Protein phosphatase 2C family protein (.1.2) AT5G66080 440 / 1e-154 Protein phosphatase 2C family protein (.1) AT5G02760 438 / 4e-154 Protein phosphatase 2C family protein (.1) AT4G38520 432 / 2e-151 Protein phosphatase 2C family protein (.1.2) AT3G17090 387 / 8e-134 Protein phosphatase 2C family protein (.1.2) AT5G06750 380 / 3e-131 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 357 / 7e-122 Protein phosphatase 2C family protein (.1) AT3G16560 152 / 2e-41 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014024 [exp] 698 / 0 AT3G12620 476 / 1e-168 Protein phosphatase 2C family protein (.1.2) Lus10015047 [exp] 572 / 0 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 570 / 0 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 464 / 4e-164 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 461 / 6e-163 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 456 / 3e-161 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 442 / 2e-155 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 442 / 5e-155 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 441 / 5e-155 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082800 [exp] 479 / 3e-170 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 460 / 2e-162 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 456 / 4e-161 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 456 / 6e-161 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 456 / 1e-160 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 451 / 1e-158 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 442 / 2e-155 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 400 / 3e-139 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 397 / 9e-138 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 396 / 3e-137 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10019893 pacid=23164011 polypeptide=Lus10019893 locus=Lus10019893.g ID=Lus10019893.BGIv1.0 annot-version=v1.0 ATGGGTAAGCCGTGTTGGAGAGCTTGCATGGTGGAGGATGATGCAGTGGGGAAGGTGGATGGACTTATGTGGCATAAGGATTTGGGTAGCCACGCTTATG GAGATTTCTCTATGGCTGTGATTCAAGCCAATGGTGTGTTGGAAGATTACAGCCAACTCGAATCTGGACCGTTGGGCACTTTCGTCGGAGTCTACGATGG ACATGGAGGACCTCAAGCTTCCAAATTTGTCAGCAACAATCTCTTCCTCAACCTCAAAAATTCGGTATTGGAACAGGGAGGAGTGACAGAATCAACACTG AAGAAGGCGTTCTCCGTGACGGAAAAGGATTTCCTGTCAATGGTTAGAAAGCGTTGGACGAGTACTCCTCAGATTGCGTCCACCGGTTCATGTTGCCTGG CCGGGGTATTTTGCAACGGAATGCTGTACGTGGCTAATGCCGGAGACTCCAAAGCTGTGTTGGGGAGAGTGGAGATAGGTAGCCATAGAGCTTCGGCTGT CCAGCTGTGCAATGAGCATAACGTGAATATCAAATCCGTTAGGGAAGAGCTCCGTTCTCTGCATCCCGAGGATTCACAGGTTGTTGTCCTGAAGCATAAG AGTTGGCGAGTCAGGGGTCTCATTCAGGTGTCGAGATCTATCGGAGATGCCTACCTGAAAAAGCCAGAGTTCCAGAGAGATCCCCTGCTTCCCAAGTTCA GACTGACTGAGACATTCGAGAAGCCGATACTTAGCTCCGAGCCTGAGGTGACTGTCCACAGGTTACAACAAGAGGATCAGTTTGTAATATTTGCGTCTGA TGGCTTATGGGAACAGCTCAGCAACCAGGAAGCAGTAGACATCGTCCACAGATTCCCGCGCAATGGAATTGCGAAGAGGCTAATGAAAGCAGCACTGCAT GAAGCTGCCAGGAAGAGAGAGATGAGATACACAGATCTCCAGAAGATTGATCCAGGGGTTCGGAGACATTTCCACGACGACATAACAGTGATAGTCGTTT TCATAGACTATGACTCGGTCAGTAGGACTCCTCACCAACCGAGTTGCACACCTTACTCGATCAAAGGAGGCGTCTCCCGACATTGA
AA sequence Show only first row Show all	>Lus10019893 pacid=23164011 polypeptide=Lus10019893 locus=Lus10019893.g ID=Lus10019893.BGIv1.0 annot-version=v1.0 MGKPCWRACMVEDDAVGKVDGLMWHKDLGSHAYGDFSMAVIQANGVLEDYSQLESGPLGTFVGVYDGHGGPQASKFVSNNLFLNLKNSVLEQGGVTESTL KKAFSVTEKDFLSMVRKRWTSTPQIASTGSCCLAGVFCNGMLYVANAGDSKAVLGRVEIGSHRASAVQLCNEHNVNIKSVREELRSLHPEDSQVVVLKHK SWRVRGLIQVSRSIGDAYLKKPEFQRDPLLPKFRLTETFEKPILSSEPEVTVHRLQQEDQFVIFASDGLWEQLSNQEAVDIVHRFPRNGIAKRLMKAALH EAARKREMRYTDLQKIDPGVRRHFHDDITVIVVFIDYDSVSRTPHQPSCTPYSIKGGVSRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	0	1
AT4G25330			unknown protein		Lus10006358 [exp]	3.0	0.8800
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	4.6	0.9102
AT2G22590			UDP-Glycosyltransferase superf...		Lus10025711 [exp]	6.6	0.8677
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	8.2	0.9096
AT1G06930			unknown protein		Lus10034209 [exp]	8.7	0.8710
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	9.2	0.8934
AT3G06070			unknown protein		Lus10034044 [exp]	12.2	0.9004
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	13.8	0.9182
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	15.7	0.8801
AT2G17650			AMP-dependent synthetase and l...		Lus10041825 [exp]	15.8	0.8769

Compare expression of checked genes

Lus10019893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.