Plant FIBer expression Database

Lus10019894 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02770 98 / 2e-25 MOS11 modifier of snc1, 11, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014023
[exp]
243 / 3e-82 AT5G02770 134 / 3e-39 modifier of snc1, 11, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G134000
[exp]
87 / 3e-21 AT5G02770 114 / 1e-31 modifier of snc1, 11, unknown protein
Potri.016G082900
[exp]
79 / 4e-18 AT5G02770 119 / 2e-33 modifier of snc1, 11, unknown protein
PFAM info
Representative CDS sequence
>Lus10019894 pacid=23164077 polypeptide=Lus10019894 locus=Lus10019894.g ID=Lus10019894.BGIv1.0 annot-version=v1.0
ATGGCAACCGAAACCGACCAACCAACCGCCGTCGCCGTTACCAACGGTGGTTCTGAAGCCCCTGTCAAAGAACCTTCATCCACGAAGCCTATTGGAGCCG
TCGTACCACCGTCCGACGATGTTTTAGGTAAGGAATCTGGGAAGGATAAGGACGGGTTGGATTCGACGAGCAAGATTGCCGCCTCTGTGTCGGAAAGTAC
CGACTCCGTCACGGACACGGAGAAGAAAATCCGAAGAGCTGAGCGATTTGGAATTTCTGTGAAGTTGTCTGAGGAAGAGAAGCGCAGCTCTCGTGCTGAA
AGGTTTGGTACTCCATCGGTGACGAAAGGTTCTGCTGGACCGAAGAATTCAGAGGAGTTGAAAAGGAAGTCTAGGGCAGAGAGATTTGGGCTGCCTGTGC
CAGCTGAACCAACTGCACCAACTGATGCTGAAGCAAAGAAGAAAGCTCGGCTGGAGAGATTTGGATCAATACCCAAATCCAATGCAGTTGAAGAAGATAA
GAAGAAAGCCAGGGCTCTCAGGTTTGCACAACCTTCTTCAACTCCAATCACTGGAGAGGGTGATGTTCAGCTAGTGATTATAAACATGAACTGCATGAAT
CTGGCTGCAAAGTGCTTATAG
AA sequence
>Lus10019894 pacid=23164077 polypeptide=Lus10019894 locus=Lus10019894.g ID=Lus10019894.BGIv1.0 annot-version=v1.0
MATETDQPTAVAVTNGGSEAPVKEPSSTKPIGAVVPPSDDVLGKESGKDKDGLDSTSKIAASVSESTDSVTDTEKKIRRAERFGISVKLSEEEKRSSRAE
RFGTPSVTKGSAGPKNSEELKRKSRAERFGLPVPAEPTAPTDAEAKKKARLERFGSIPKSNAVEEDKKKARALRFAQPSSTPITGEGDVQLVIINMNCMN
LAAKCL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02770 MOS11 modifier of snc1, 11, unknown ... Lus10019894
[exp]
0 1
AT3G21480 BRCT domain-containing DNA rep... Lus10037907
[exp]
3.2 0.8715
AT4G18240 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SY... Lus10038491
[exp]
7.7 0.8584
AT1G73960 TAF2 TBP-associated factor 2 (.1.2) Lus10016716
[exp]
13.3 0.8604
AT2G17030 F-box family protein with a do... Lus10012519
[exp]
14.4 0.7933
AT5G14770 Tetratricopeptide repeat (TPR)... Lus10026206
[exp]
18.5 0.8374
AT3G05040 HST1, HST HASTY 1, HASTY, ARM repeat sup... Lus10033845
[exp]
20.7 0.8574
AT2G45700 sterile alpha motif (SAM) doma... Lus10038078
[exp]
24.0 0.8384
AT2G39930 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLAS... Lus10021586
[exp]
24.8 0.7738
AT4G21660 proline-rich spliceosome-assoc... Lus10018475
[exp]
25.8 0.8189
AT3G27670 RST1 RESURRECTION1, ARM repeat supe... Lus10013074
[exp]
26.5 0.8117

Lus10019894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.