Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12130 398 / 1e-134 ATTERC, PDE149 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) AT5G02780 258 / 2e-82 GSTL1 glutathione transferase lambda 1 (.1.2) AT3G55040 255 / 2e-80 GSTL2 glutathione transferase lambda 2 (.1) AT5G02790 253 / 2e-80 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT1G19570 74 / 7e-15 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT1G78340 72 / 6e-14 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G78370 69 / 4e-13 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT2G02380 62 / 9e-11 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1) AT1G78320 62 / 9e-11 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT2G02390 61 / 1e-10 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014022 [exp] 767 / 0 AT5G12130 402 / 7e-137 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10015049 [exp] 278 / 1e-89 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10003994 [exp] 274 / 2e-88 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10040347 [exp] 254 / 2e-79 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10026199 [exp] 69 / 7e-12 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042469 [exp] 66 / 8e-12 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10021103 [exp] 66 / 8e-12 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10005592 [exp] 64 / 3e-11 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10019480 [exp] 64 / 3e-11 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133900 [exp] 453 / 3e-156 AT5G12130 472 / 5e-167 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Potri.016G083500 [exp] 290 / 1e-94 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.006G133500 [exp] 283 / 7e-92 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.008G046800 [exp] 267 / 6e-85 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.010G214800 [exp] 83 / 2e-18 AT5G02780 98 / 6e-26 glutathione transferase lambda 1 (.1.2) Potri.011G140400 [exp] 77 / 9e-16 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436500 [exp] 73 / 2e-14 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436600 [exp] 72 / 7e-14 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G114000 [exp] 71 / 1e-13 AT1G17180 265 / 2e-90 glutathione S-transferase TAU 25 (.1) Potri.001G436800 [exp] 71 / 2e-13 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0292 [flax] [poplar] LysE PF03741 [flax] [poplar] TerC Integral membrane protein TerC family CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019895 pacid=23164021 polypeptide=Lus10019895 locus=Lus10019895.g ID=Lus10019895.BGIv1.0 annot-version=v1.0 ATGGTTTTCAATCTCCACATCAAAGCCGCAACTCCACGGGCAGTTCTGGGGCTGGCTTCCGCAATCCACGACGACGTTCGAGCTCCTCCTATTAACTTCC ATCCCTTCTCGCTCAGGCTTTCAACTGATCCTAAATGTATTAGGGTTCAGCTCGTTCAGCCCCGATTCCCTTCTGTTTCCCCAGCCGCTAATGGAGACCG CCGGCGGGGTTGTCAGGTTGCTGGTGCAAGAGACACAGAAAAGGAAGGAGATTTATCCAACTCCGAAGCTGAGAAGATCAGTTCTGAAAGACATGATGAT GGGTTGGGTAAAGCCGAGGGAGATAAATCGTATGTGACATCAGTTAAAACCGTTGCTCTATGTGTTGGCAGTGCGGTAGCATTTGGAATTGGCATTGGTC TGAAAGAAGGAGTTGGCAAGGCATCGGAGTTCTTTGCTGGGTACCTCTTGGAGCAAAGTTTGTCTGTTGATAATCTATTCGTCTTTGTTCTGATTTTTAA CTATTTTAAAGTACCACTCAAATATCAGAATCGAGTGCTTTCATATGGTATTGCTGGTGCAATCATCTTTCGTTTGTCGTTGATACTTCTTGGAACGGTC ACTCTTCAGAGATTTGAGGCAGTCAACCTACTCCTGGCAGGAATATTGCTATACTCATCTTTCAAGTTACTATTTGTTAGTGAAGAAGATGACACTGATC TATCCGACAAGTTTATTGTGAAGATTTGCCAGCGATTTATTCCGGTCACATCTAAATATGACGGGGATCGATTTATAACAATGCACGAGGGCGTGTGGAA AGCCACACCCTTACTTCTTACAGTAGCTGTACTTGAGCTCAGCGATATTGCATTTGCTGTCGACTCCATACCTGCTGTTTTTGGTGTTACACGAGATCCG TTCATTGTTATCTCTTCCAACCTTTTTGCAATACTAGGTCTGAGGTCGTTTTTCACGCTCATCTCCCAGAGTATGTCAGAGTTGGAATATTTGCAACCGT CGATTGCGATCGTCCTAGGCTTCATTGGATGCAAGATGATCCTGGATTTCTTCGCCAAATCATCAATTGTTTCACCATTGCGTGTTATGTTGGTTGGAAG TTCGTATATATCCAACGCCAGAGAGTCTCTACCTCCGTCACTGGATTCCGCCAGCCACGCGCCGCCTCCCTTTAACGGAACCGCCACCGCCAGATTGTAC ACGAGTTACAGAAGCCCATTTGCTCAGCGCGCCTGGATTGCGAGGAATTGCAAGGGTTTAAAGGACAAGATCCAGCTGGTCCCGATAAACCTTGAAGACA AGCCGTCCTGGTACAAGCAAGTAAACCCACAAGGAAAGGTGCCAGCTTTGGAACACAACGGTAAAATCATCGCGGAAAGCCTCGATATATTACGCTATGT CGACACCAATTTCGACGGCCCACCACTCTTCCCAGACGATACTGAAAGGAAAAGTTTTGCTGAGGAATTGCTGTCCTACTCTGATACCTTCACTGAGATG ATTCTCAACTCTTTTAAAGGAGAAACAGTAAGAGAAGCCGATCCTGCATTTGATGTGGTGGAAGCTGCCCTTGGGAAGTTCAAAGACGGACCCTTTTTCC TTGGCAGACAGTTCAGCTTGGTGGACATAGCTTACATTCCGTTCGTTGAAAGAGCAGAGATATTCCTGCCTGCAGCTTGGAACTACGATATCACTGGTGG AAGGCCACAACTTGCTGCTTGGATTCAGGAAATGAAGAGGGTTGATGGGGTCAAGGAAACGAAGAGCGATTCCAGAGAGGTGGTCGGCTTCTACAAGAAT CGCTTCTTGGCACAGGATCAGTGA
AA sequence Show only first row Show all	>Lus10019895 pacid=23164021 polypeptide=Lus10019895 locus=Lus10019895.g ID=Lus10019895.BGIv1.0 annot-version=v1.0 MVFNLHIKAATPRAVLGLASAIHDDVRAPPINFHPFSLRLSTDPKCIRVQLVQPRFPSVSPAANGDRRRGCQVAGARDTEKEGDLSNSEAEKISSERHDD GLGKAEGDKSYVTSVKTVALCVGSAVAFGIGIGLKEGVGKASEFFAGYLLEQSLSVDNLFVFVLIFNYFKVPLKYQNRVLSYGIAGAIIFRLSLILLGTV TLQRFEAVNLLLAGILLYSSFKLLFVSEEDDTDLSDKFIVKICQRFIPVTSKYDGDRFITMHEGVWKATPLLLTVAVLELSDIAFAVDSIPAVFGVTRDP FIVISSNLFAILGLRSFFTLISQSMSELEYLQPSIAIVLGFIGCKMILDFFAKSSIVSPLRVMLVGSSYISNARESLPPSLDSASHAPPPFNGTATARLY TSYRSPFAQRAWIARNCKGLKDKIQLVPINLEDKPSWYKQVNPQGKVPALEHNGKIIAESLDILRYVDTNFDGPPLFPDDTERKSFAEELLSYSDTFTEM ILNSFKGETVREADPAFDVVEAALGKFKDGPFFLGRQFSLVDIAYIPFVERAEIFLPAAWNYDITGGRPQLAAWIQEMKRVDGVKETKSDSREVVGFYKN RFLAQDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10019895 [exp]	0	1
AT2G23390			unknown protein		Lus10010689 [exp]	4.5	0.8797
AT5G09820			Plastid-lipid associated prote...		Lus10033514 [exp]	4.6	0.8980
AT5G56850			unknown protein		Lus10008560 [exp]	4.9	0.9037
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	8.4	0.8894
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	9.7	0.8996
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	10.4	0.8912
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	13.7	0.8841
AT5G09820			Plastid-lipid associated prote...		Lus10020860 [exp]	18.3	0.8841
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008210 [exp]	24.5	0.8601
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	26.5	0.8544

Compare expression of checked genes

Lus10019895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.