Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 169 / 5e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 160 / 5e-50 Protein of unknown function (DUF567) (.1) AT2G14560 130 / 1e-37 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 125 / 2e-35 Protein of unknown function (DUF567) (.1) AT3G16900 111 / 8e-31 Protein of unknown function (DUF567) (.1) AT3G15810 72 / 3e-15 Protein of unknown function (DUF567) (.1) AT3G56180 69 / 2e-14 Protein of unknown function (DUF567) (.1) AT1G80120 58 / 3e-10 Protein of unknown function (DUF567) (.1) AT3G10986 54 / 9e-09 Protein of unknown function (DUF567) (.1) AT5G41590 48 / 8e-07 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014021 [exp] 377 / 3e-135 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 348 / 2e-123 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 348 / 2e-123 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 235 / 5e-79 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 225 / 6e-75 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 222 / 9e-74 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 201 / 1e-65 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 199 / 2e-64 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 190 / 2e-61 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130700 [exp] 248 / 5e-84 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 246 / 3e-83 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 246 / 4e-83 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 222 / 9e-74 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 212 / 4e-70 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 177 / 3e-56 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 174 / 6e-55 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 170 / 2e-53 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 166 / 6e-52 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 155 / 8e-48 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10019896 pacid=23164066 polypeptide=Lus10019896 locus=Lus10019896.g ID=Lus10019896.BGIv1.0 annot-version=v1.0 ATGGCCACCGGTCACTCCAGCAACCCGATCCCGGCGATGACAGTGTATCTTCCCCTGGAGCAGCCAGTGGTGGTGGTCAGCCCTTACTTACTGGCTCAGT ACCCTGTCGATCTAACAGTGGCGACCAAGCTGATAACCCTTGGAGAAAATGACTTCACCGTCAATGACGTCAATGGGACCTTCATCTTCAGAGTCAAGAG CAAGCTCATGAGCCTGCACGATCGCCGGAAGTTGATGGATGCCTCCAACAACGTGCTCGTTTCCACGTCACAGAAAGCGTTTCGCGAGGACAACGATGAG TTGCGGTTTACCGTAAGGAAATCGTCGGTGATGCAGCTGATGAAGACCGAGTTATGCGTGTTCTTGGCTAGGAACACCAAGGAAGAAGTCCTTGATTTCA GGGTCAAGGGCAGTTTCCACCAGAGTTCATGCGTTATTTATCTAGGCAACACCAACAAGATCATTGCTCAGATGTACAGAGGACACGGCATGGCAACGAT GTTGTTTGAAGCGGACAATTTCAGGGTGACCATCTACCCTGGTGTTGATTACGCCTTCATCGTCTCGCTTGTAGTGATCCTTGACGAGATCAACGCTGAC CGCAGTGGTGAAGATTAA
AA sequence Show only first row Show all	>Lus10019896 pacid=23164066 polypeptide=Lus10019896 locus=Lus10019896.g ID=Lus10019896.BGIv1.0 annot-version=v1.0 MATGHSSNPIPAMTVYLPLEQPVVVVSPYLLAQYPVDLTVATKLITLGENDFTVNDVNGTFIFRVKSKLMSLHDRRKLMDASNNVLVSTSQKAFREDNDE LRFTVRKSSVMQLMKTELCVFLARNTKEEVLDFRVKGSFHQSSCVIYLGNTNKIIAQMYRGHGMATMLFEADNFRVTIYPGVDYAFIVSLVVILDEINAD RSGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10019896 [exp]	0	1

Compare expression of checked genes

Lus10019896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.