Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02800 509 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 485 / 1e-170 Protein kinase superfamily protein (.1.2) AT5G13160 470 / 2e-165 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT2G28590 460 / 8e-162 Protein kinase superfamily protein (.1) AT1G07870 453 / 4e-159 Protein kinase superfamily protein (.1.2) AT3G20530 445 / 1e-156 Protein kinase superfamily protein (.1) AT3G24790 439 / 2e-154 Protein kinase superfamily protein (.1) AT3G07070 422 / 4e-147 Protein kinase superfamily protein (.1) AT4G13190 419 / 2e-146 Protein kinase superfamily protein (.1) AT1G20650 417 / 9e-146 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014019 [exp] 666 / 0 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 510 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 509 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 509 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 501 / 1e-178 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 490 / 1e-172 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 490 / 2e-172 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 472 / 4e-166 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 439 / 2e-153 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133300 [exp] 521 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 514 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 509 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 489 / 7e-172 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 485 / 2e-170 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 478 / 1e-168 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 471 / 8e-166 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 461 / 1e-162 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 455 / 3e-160 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 440 / 9e-155 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10019897 pacid=23164059 polypeptide=Lus10019897 locus=Lus10019897.g ID=Lus10019897.BGIv1.0 annot-version=v1.0 ATGGAGATGGTAGTGATGATCAAGGACAAAAACCCATCACTTGAAAAGGAAAGAAGCCGTTCAGAAAGGTCGAGGAAAAATGGGAAAGGAGAATCCAAGA TAAACTCGGATGACATTGCAGCAAAGACCTTCACATTCCGAGAACTAACAGTAGCAACTAACAACTTCAGAAAGCAATGCCTTCTTGGTGAAGGAGGCTT TGGAAGGGTTTACAAAGGCTATTTAGAAAGCATTAACCAGGTTGTGGCAATCAAGCAACTTGACAGGAATGGCTTGCAAGGGAATAGAGAATTCCTAGTT GAGGTCCTGATGTTGAGCCTACTTCATCACCAAAACCTCGTGAATTTGACCGGATACTGTGCCGATGGAGATCAAAGGCTTCTGGTTTACGAATACATGC CTCTAGGATCTCTGGATGACCACATCCACGATATTGAGCTTGGAGGAAAGAAAGGCCTCGATTGGAACACAAGAATGAGTATCGCGGCAGGAGCAGCAAG GGGGTTGGAGTTCTTGCATGACAAGGCAAAGCCTCCTGTGATATACAGAGATCTTAAATGCTCAAACATTTTACTAGACAAAGGATATCATCCGAAACTA TCCGATTTCGGGCTGGCGAAACTCGGCCCCGTTGGAGACAACACTCATGTATCCACGAGAGTCATGGGGACTTACGGTTATTGTGCTCCTGAATACGCGA TGACCGGCCAACTAACCTTGAAGTCCGATGTTTATAGCTTCGGCGTTGTCCTCCTGGAGATCATTACGGGAAGGAGGGCTTACGATACCTCCAAGACGGT AGGAGAGCAGAATCTTGTTGCTTGGGCTAAACCTTTGTTCAACGATCGGAGAAACTTTGCGAAAATGGCAGATCCAATGCTGAGAGGAGAGTATCCTGCG AGGGCTCTGTACCAAGCTCTTGCCGTGGCAGCAATGTGCGTTCAGGAACAGCCTAACATGAGACCTGCAATGGTTGATGTTGTCACGGCTTTGTCTCACC TTGCTTCACAGAAGAGTGCAACCGAGACGCAGCAGTCGCTCCAGATCTCGCGCTTGGCTGCAGAAACCTCACCTAGTGCGAAGGCTCGAAGTTGA
AA sequence Show only first row Show all	>Lus10019897 pacid=23164059 polypeptide=Lus10019897 locus=Lus10019897.g ID=Lus10019897.BGIv1.0 annot-version=v1.0 MEMVVMIKDKNPSLEKERSRSERSRKNGKGESKINSDDIAAKTFTFRELTVATNNFRKQCLLGEGGFGRVYKGYLESINQVVAIKQLDRNGLQGNREFLV EVLMLSLLHHQNLVNLTGYCADGDQRLLVYEYMPLGSLDDHIHDIELGGKKGLDWNTRMSIAAGAARGLEFLHDKAKPPVIYRDLKCSNILLDKGYHPKL SDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRRAYDTSKTVGEQNLVAWAKPLFNDRRNFAKMADPMLRGEYPA RALYQALAVAAMCVQEQPNMRPAMVDVVTALSHLASQKSATETQQSLQISRLAAETSPSAKARS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10014649 [exp]	1.0	0.9038
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Lus10000776 [exp]	2.8	0.8774
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	3.9	0.8817
AT5G26250			Major facilitator superfamily ...		Lus10005870 [exp]	7.9	0.8130
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	8.7	0.8858
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	12.5	0.8745
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	13.3	0.8509
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	13.4	0.8418
AT2G27830			unknown protein		Lus10009391 [exp]	17.3	0.7978
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	18.9	0.8449

Compare expression of checked genes

Lus10019897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.