Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 213 / 1e-63 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT4G26640 194 / 7e-57 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G13960 194 / 1e-56 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 192 / 1e-56 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G38470 187 / 1e-53 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 177 / 3e-53 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G04880 170 / 6e-48 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G30935 143 / 5e-38 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT2G37260 131 / 1e-34 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT4G12020 127 / 2e-31 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026634 [exp] 210 / 3e-63 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10030424 [exp] 208 / 2e-62 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10037131 [exp] 207 / 2e-62 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 204 / 4e-62 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 205 / 2e-61 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10001265 [exp] 201 / 3e-59 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 199 / 3e-58 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10015377 [exp] 199 / 3e-58 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10016595 [exp] 198 / 2e-57 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083600 [exp] 284 / 1e-91 AT2G37260 337 / 4e-112 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) Potri.006G133200 [exp] 278 / 2e-89 AT2G37260 330 / 3e-109 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) Potri.010G163000 [exp] 217 / 2e-65 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.013G153400 [exp] 204 / 8e-60 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.008G091900 [exp] 202 / 8e-60 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.016G128300 [exp] 198 / 2e-57 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.004G120800 [exp] 197 / 2e-57 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.001G361600 [exp] 197 / 2e-57 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 199 / 7e-57 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G123500 [exp] 197 / 8e-57 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10019898 pacid=23164060 polypeptide=Lus10019898 locus=Lus10019898.g ID=Lus10019898.BGIv1.0 annot-version=v1.0 ATGTTAAAAGGGTTAGTTGGGAAGCTGGTAGAGACACTGAGAGAAGAGGGAGTACCATTTATCTCCACTATACTAGATTTTCTACTCACTGTAACTGGGA CCTTTGCTGAGCTGAAGAGAAAAACCCCCCTCTCAGATATTTCAGCAATGGAGATGAAGGAAACAGAAAAATTAGTGATAGCAAAACCAGTACCTTCTAG GCCTACTAGCTCCACTTTTGGCTCTTCAATAATCCTCCCCTTGCAGCCTAATTCCCAGGATGAAGCTTCTCCTCCCACCAACATCATTTACAAGCCACAG GCAAAGCTTGTCTCCAAGAGAACTGCTTCTCTCCTTGCAAATATGGGAAACAACTTCAACTCAACTCGTGATCCGGAATTAGCCACGAGATCAAATGCAA GCTCCAATGATGATGCTGAAGAAGCAGCAGCAGTCCATCAGGGAACTGAACGATTGACAATATCGACAGAGGAGGAGGAGGAGGATGACGACGATCCGAA AACAGCAGCTTCTTCAGTTCAAGTTGCCGGAGGCCATGTTGTGGATCACAGTAGGCCATCTTACGACGGTTACAACTGGAGGAAGTACGGGCAGAAGCAA GTCAAAGGGAGCGAATATCCGCGAAGCTATTACAAATGCACTCACCCGAATTGTCCCGTGAAGAAGAAAGTGGAGAGGTCGTTCGATGGACAGATTGCTG AGATTGTTTACAAGGGCGACCATAGCCATCCCAAGCCGCTTCCGCCACCGCCGCCTCAGCAGCATAAACGGAATTCGAATGCCGGTGGTAATTGCAGGAA TGATGAACAAGTGTGTGGAACTGCTGGAGGAGAAATCCTGACCGGAACAGGATTACCAGCCAATGCTGTTGTGGAATTCGAGGGAGGAAGCAGCAGAGGA GGAGGATTAATCCAGGGAGATCATGATGAACCCAGATCCAAAAGAAGGAGAGTTGAGGATCAGGTAAATGATCCGTCAGGAATTGCAGCAGCACAAGAAC CTGGAACGGATCCTGAAATATTAGGAGACGGATTTCGCTGGAGAAAATACGGACAGAAAGTTGTCAGAGGAAACCCATATCCAAGGAGCTACTACAGGTG CACGAACCTCAAGTGTACAGTGAGGAAATACGTGGAAAGAGCTCCTGACGATCCGACAACTCTTGTAACTACCTACGAAGGCAAGCACAATCATGAGATG CCTTCCAGAACAGAACCTGACACTTCGTCTTCCAGGTCTTCTGCCTCCAGAGCCAAACCCTGA
AA sequence Show only first row Show all	>Lus10019898 pacid=23164060 polypeptide=Lus10019898 locus=Lus10019898.g ID=Lus10019898.BGIv1.0 annot-version=v1.0 MLKGLVGKLVETLREEGVPFISTILDFLLTVTGTFAELKRKTPLSDISAMEMKETEKLVIAKPVPSRPTSSTFGSSIILPLQPNSQDEASPPTNIIYKPQ AKLVSKRTASLLANMGNNFNSTRDPELATRSNASSNDDAEEAAAVHQGTERLTISTEEEEEDDDDPKTAASSVQVAGGHVVDHSRPSYDGYNWRKYGQKQ VKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGDHSHPKPLPPPPPQQHKRNSNAGGNCRNDEQVCGTAGGEILTGTGLPANAVVEFEGGSSRG GGLIQGDHDEPRSKRRRVEDQVNDPSGIAAAQEPGTDPEILGDGFRWRKYGQKVVRGNPYPRSYYRCTNLKCTVRKYVERAPDDPTTLVTTYEGKHNHEM PSRTEPDTSSSRSSASRAKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	1.0	0.9738
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	1.4	0.9497
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	2.4	0.9471
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	2.8	0.9335
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	3.9	0.9219
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	4.2	0.9081
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	4.2	0.9197
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	4.6	0.9158
					Lus10015658 [exp]	5.7	0.9128
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	6.9	0.8870

Compare expression of checked genes

Lus10019898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.