Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02810 224 / 3e-63 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G60100 124 / 7e-30 APRR3 pseudo-response regulator 3 (.1.2.3) AT2G46790 89 / 2e-18 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT2G46670 82 / 7e-18 CCT motif family protein (.1) AT5G24470 83 / 2e-16 APRR5 pseudo-response regulator 5 (.1) AT5G61380 71 / 2e-12 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT1G07050 57 / 3e-09 CCT motif family protein (.1) AT5G57180 60 / 4e-09 CIA2 chloroplast import apparatus 2 (.1.2.3) AT5G24930 59 / 8e-09 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT4G25990 57 / 2e-08 CIL CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014018 [exp] 964 / 0 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10015571 [exp] 91 / 1e-18 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10008879 [exp] 83 / 3e-16 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10032934 [exp] 82 / 4e-16 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10021629 [exp] 80 / 3e-15 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10008878 [exp] 79 / 4e-15 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10023230 [exp] 79 / 6e-15 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10000566 [exp] 78 / 8e-15 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 78 / 1e-14 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046200 [exp] 276 / 7e-82 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G215200 [exp] 239 / 1e-68 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.015G002300 [exp] 91 / 8e-19 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 87 / 2e-17 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 87 / 2e-17 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 84 / 2e-16 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.015G061900 [exp] 78 / 1e-14 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.018G142100 [exp] 57 / 3e-08 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.006G075200 [exp] 57 / 4e-08 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3) Potri.006G173600 [exp] 56 / 5e-08 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10019899 pacid=23164050 polypeptide=Lus10019899 locus=Lus10019899.g ID=Lus10019899.BGIv1.0 annot-version=v1.0 ATGAAAGGTGATGGAGGCGGGGATGGAGGTGGTCCAGCTATAGAACTAAATAACCGGCTGTCTAGTGTAGAAAAGAGGGTTATTGAGGATGGAGTTGTGA ATAAGGACAAAAAATTGGTTGAAGATGATGTGAAAGATCGTCTTGGAGGGGCTGTTCAGGTCGCACTTCCAATCCAACAGCAATCTCAAGGGACAACAGT TTGCTGGGAACGGTTTCTTCATCTCAGAACCCTCAAGGTTCTGCTGGTGGAAAATGACGATTCAACCCGCTTTGTTGTCTCCGCTCTGCTGCGTAACTGC AGCTATGAAGTGATGTCTTCCCACGACTCAATGGGTTTGGTCTTTAAGTGCCTGTCAAAGGGAGCTGTTGATTTTTTAGTCAAACCCATACGAAAGAATG AGCTTAAGATCCTTTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGCGGCAGTGGAAGTGAAAGTGGCAGTGTAACTCAAACTCAAAAGTCCGTAAG ATCAAAAAATGTTGAGAAGTCCAACAATAACAGCAGCAGCAGTGATGAGGATATTGATGGTAGCTTTGGTCCGAATGTTGGTGATGGAAGCGATGATGGG AGTGGTACACAGAGTTCTTGGACAAAGCAAGACGTCGAGGTGGAGAGCCCTCGTGCTTTGCCTCAATGGCAGCAAGTTTCTGATTGTCCTGATAGTACTT GTGCCCAAGTCATTAATTCAAATGGTGAAGTATCTGGTAACAAACAAGTTCATGTGTCCAAAGGAAAGGAACATCAAGAGGAGCAACGACTGGATATTTC CGCTATTGACAAAGATCATGGAATTGGAGCACCACAGAAGCCTGACTTGCAACGCAACTTTGCAACTGGAGATCCAAAGAACCTTGCAGGGATCAGACAA AGTCATCTGCTGGAACAAGGGTGTACCGGATTTGATGAGCACGAAGATAAGGGACTCGTCAATATAAATAGTGCAAATAATTTGCAAGGTGAAGCCGGAA GAACAGCTGTCCTCACTCTTAATGCTGCTGAATCGCGTATGGACAGTGCAGAAGTTAAGATCTCAGACTCCATAGTCAAGGCTAGTACTGACCCTATGGG AGCATCCTTTGACGTAAGTTTAAAGAGAGTTAGAGGAGCCAAGGATGTTAGTAAGAGTAATCAGGACGAACGCAATGTTCTAAGGCGTTCGGACTTCTCA GCCTTCTCAAGATATAATGCAGCTTCGAATTCAAACAAGGCTTCTGGAGGAAACACTCAAAGCGGTCCTCCTGTTGTTGCGAGTTTTGATGATGTCAGAA GGGGGACATTCCACGATCGCCGCTCTAACTCAATTAACAATACTCCTAACCGTCGTTCAAACGTGGATTGCAACACTGTTGACATGGGCTCCACAACGAA TACTACTTTTCTCGAGTCAGCGATTCTGAAAAACAAATCTGGAGTAACATCGATGGTTAGATACACGCACGCCCCATCTTCCAGCCAGCCTACAGAAGGC ATTACGAAATCCATTCCTCCTCATCAAGTTATCTCGGAAAAAGCTGACAATTTAGCAGCAAGGGCTACTACACTGGCTCAACCAAGTGATGGCCACATGG AGCTCCCAAATCATCAGCATCATCCGCAACCAGCTAAGCATGGTGATTCAGCATCAAAGAAGATGATGACACCACATAATGGATCATCCAATGCCCTAGG TGGTGGCCCTTTTGAAGGCAATGCTTGCAATTGCAGCATCAATGGAAGTGCCTCGGGCAGCAATCATGGGAGTAACCATGGTAGTAATGGAAACAATGGG AGTAGCCCGGCAGTTCATGCTGGGGCAACTAACATGGAGAGTGATAATGGAGTTGCTGGTAAGAGTGGAAGTGGCGGTGCTGATGCGAGTGGGACCGGAG GAGGGAACGGGAGCGACAATGGCAGTGGTAGTGGCAGTGGAGACAAACTAGATCCAGATAGGCTTTTACAAAGAGAAGCTGCTTTGGCCAAATTCCGACA GAAGAGGAAAGATCGATGCTTCAGGAAAAAGGTTCGGTACCAGAGCAGGAAGAAACTTGCGGAGCAGCGGCCTCGCTTTCGGGGACAATTTGTGCGGAAA GACGGTAATGAAAGCACTAGTCGAGCTACCGATAGCTAA
AA sequence Show only first row Show all	>Lus10019899 pacid=23164050 polypeptide=Lus10019899 locus=Lus10019899.g ID=Lus10019899.BGIv1.0 annot-version=v1.0 MKGDGGGDGGGPAIELNNRLSSVEKRVIEDGVVNKDKKLVEDDVKDRLGGAVQVALPIQQQSQGTTVCWERFLHLRTLKVLLVENDDSTRFVVSALLRNC SYEVMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCHSSSGSGSESGSVTQTQKSVRSKNVEKSNNNSSSSDEDIDGSFGPNVGDGSDDG SGTQSSWTKQDVEVESPRALPQWQQVSDCPDSTCAQVINSNGEVSGNKQVHVSKGKEHQEEQRLDISAIDKDHGIGAPQKPDLQRNFATGDPKNLAGIRQ SHLLEQGCTGFDEHEDKGLVNINSANNLQGEAGRTAVLTLNAAESRMDSAEVKISDSIVKASTDPMGASFDVSLKRVRGAKDVSKSNQDERNVLRRSDFS AFSRYNAASNSNKASGGNTQSGPPVVASFDDVRRGTFHDRRSNSINNTPNRRSNVDCNTVDMGSTTNTTFLESAILKNKSGVTSMVRYTHAPSSSQPTEG ITKSIPPHQVISEKADNLAARATTLAQPSDGHMELPNHQHHPQPAKHGDSASKKMMTPHNGSSNALGGGPFEGNACNCSINGSASGSNHGSNHGSNGNNG SSPAVHAGATNMESDNGVAGKSGSGGADASGTGGGNGSDNGSGSGSGDKLDPDRLLQREAALAKFRQKRKDRCFRKKVRYQSRKKLAEQRPRFRGQFVRK DGNESTSRATDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	1.4	0.9049
AT3G49490			unknown protein		Lus10015581 [exp]	1.4	0.8939
AT3G51130			unknown protein		Lus10014270 [exp]	3.9	0.8806
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10041820 [exp]	4.0	0.8506
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	7.5	0.8275
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	7.5	0.8543
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	8.2	0.8604
AT4G27020			unknown protein		Lus10032644 [exp]	8.8	0.8144
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	8.9	0.8565
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	9.5	0.8331

Compare expression of checked genes

Lus10019899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.