Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37240 197 / 2e-63 Thioredoxin superfamily protein (.1) AT5G65840 72 / 9e-15 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014017 [exp] 232 / 7e-77 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1) Lus10030907 [exp] 61 / 8e-11 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10030582 [exp] 61 / 9e-11 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10011727 [exp] 55 / 6e-09 AT5G65840 297 / 1e-101 Thioredoxin superfamily protein (.1) Lus10013051 [exp] 55 / 1e-08 AT2G37240 60 / 4e-10 Thioredoxin superfamily protein (.1) Lus10029111 [exp] 54 / 1e-08 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133100 [exp] 197 / 3e-63 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1) Potri.014G012100 [exp] 60 / 1e-10 AT5G65840 321 / 7e-111 Thioredoxin superfamily protein (.1) Potri.008G113000 [exp] 55 / 1e-08 AT2G37240 62 / 1e-10 Thioredoxin superfamily protein (.1) Potri.010G136300 [exp] 54 / 2e-08 AT2G37240 62 / 8e-11 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10019900 pacid=23164056 polypeptide=Lus10019900 locus=Lus10019900.g ID=Lus10019900.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCACTGTGCGTCCTGCTTCCCAAAGAGCATCCTTCACCTAATTTTCCCGCAAATTCTTCCTCCACTCGGCTCATTCACTTCTCACCACTGT CTCACCGCAGCGGCATTGGCCAGTCGGTCGAACTCTCGCTCCACCCCCGGGTTCAGATAGCTACAGCCATATCAGGATCCTCTGGCAATGCAGGTGTTGG ATCGTCCAGCTCAGTAAGTCAAGAGACGACGACGTCGAATTCACTGGACAGCGTGAAGGTGGTTGATCTCAACAAGAAAGAAATTCCAATTTCCGATTTG TGGAAAGATCGGAAATCAGTCGTCGTTTTTGCTCGTCATTTTGGATGCGTGCTTTGCCGGAAACGAGCACATTATCTCGCTGCTAAGAAGGATGTAATGG ATGCAGCTGGAGTGACTCTGGTTTTGATTGGAACGGGTAGTGTCGATCAGGTAATTCCTGAGAAATTTGTGGAAGTATACGCAGATCCAAACCACTCGGC GTATGAGGCTTTGAACTTTGTTTCTGGAGTTGCAATACTCCAAAGGCGGGAAGGTGGCATTATAGTTGCAGGCCCTGGGAAACCTAATATCTCATACATC CACAGGGATAAAGAAGCTGGTGATGACCCAGATATTGAAGAAGTGCTCGGTGCTTGTTGCCGGTAA
AA sequence Show only first row Show all	>Lus10019900 pacid=23164056 polypeptide=Lus10019900 locus=Lus10019900.g ID=Lus10019900.BGIv1.0 annot-version=v1.0 MAVSLCVLLPKEHPSPNFPANSSSTRLIHFSPLSHRSGIGQSVELSLHPRVQIATAISGSSGNAGVGSSSSVSQETTTSNSLDSVKVVDLNKKEIPISDL WKDRKSVVVFARHFGCVLCRKRAHYLAAKKDVMDAAGVTLVLIGTGSVDQVIPEKFVEVYADPNHSAYEALNFVSGVAILQRREGGIIVAGPGKPNISYI HRDKEAGDDPDIEEVLGACCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37240			Thioredoxin superfamily protei...		Lus10019900 [exp]	0	1
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	3.2	0.9085
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	4.5	0.9207
					Lus10026075 [exp]	5.5	0.8659
AT3G60810			unknown protein		Lus10004025 [exp]	5.9	0.8802
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10030403 [exp]	12.3	0.8471
AT5G45650			subtilase family protein (.1)		Lus10002780 [exp]	13.3	0.8807
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	18.6	0.8984
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	23.0	0.8415
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	24.4	0.8662
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	24.5	0.8632

Compare expression of checked genes

Lus10019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.