Plant FIBer expression Database

Lus10019901 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53470 151 / 7e-48 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014016
[exp]
235 / 5e-81 AT3G53470 151 / 4e-48 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G084000
[exp]
166 / 4e-54 AT3G53470 142 / 2e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10019901 pacid=23163993 polypeptide=Lus10019901 locus=Lus10019901.g ID=Lus10019901.BGIv1.0 annot-version=v1.0
ATGAATATTCATGCTCGAATCCGATCGATCACAACCATAACCACAACCTGCGATCCAGCAAGTATCTCCTCCGCGTTCTTATGGAAAAAGTCGCCGTCTA
CGTCGTCGTTTTTCACTCCGCCTCAGTGTTCCAAACGGAATCCTCCTCAAGAACCTCAACGCAACGGCGACGGTGAAAAGTCGTCGACAGACTGGGACAA
GGCATGGTCAAGCTTCAAGAAGCAAGGGAAGAAAACATTGTTCTCGCAGTTCTCTCCAAACAAATATGTGACCTGGAACCCCAAGCCGTCGGACTACCCG
CTTTCGGAAGAGGTTGATCCCATCAAGAGGACTGAAAGATCAAACCTTAGGTTGTGGACGAGTCCAGGGTTCACCCTGGTTGGAGCCATTGTATTAGTCT
CCTTCCTCCTTATTTACACCATTCTTGCTCCAGTCAAGTGA
AA sequence
>Lus10019901 pacid=23163993 polypeptide=Lus10019901 locus=Lus10019901.g ID=Lus10019901.BGIv1.0 annot-version=v1.0
MNIHARIRSITTITTTCDPASISSAFLWKKSPSTSSFFTPPQCSKRNPPQEPQRNGDGEKSSTDWDKAWSSFKKQGKKTLFSQFSPNKYVTWNPKPSDYP
LSEEVDPIKRTERSNLRLWTSPGFTLVGAIVLVSFLLIYTILAPVK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G53470 unknown protein Lus10019901
[exp]
0 1
AT2G01870 unknown protein Lus10030135
[exp]
1.4 0.9369
AT3G19800 Protein of unknown function (D... Lus10040969
[exp]
4.9 0.9258
AT3G53470 unknown protein Lus10014016
[exp]
4.9 0.9238
AT1G65230 Uncharacterized conserved prot... Lus10020202
[exp]
4.9 0.9269
AT4G35000 APX3 ascorbate peroxidase 3 (.1) Lus10019781
[exp]
8.4 0.8561
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Lus10035346
[exp]
11.8 0.9217
AT1G54350 ABCD2 ATP-binding cassette D2, ABC t... Lus10001839
[exp]
13.4 0.9034
AT1G32550 FdC1 ferredoxin C 1, 2Fe-2S ferredo... Lus10004576
[exp]
14.0 0.9134
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Lus10029979
[exp]
14.1 0.9181
AT5G20140 SOUL heme-binding family prote... Lus10013345
[exp]
15.0 0.9088

Lus10019901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.