Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09630 649 / 0 Ribosomal protein L4/L1 family (.1.2) AT5G02870 649 / 0 Ribosomal protein L4/L1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026476 [exp] 791 / 0 AT3G09630 678 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10014014 [exp] 589 / 0 AT3G09630 510 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10019904 [exp] 561 / 0 AT3G09630 488 / 3e-173 Ribosomal protein L4/L1 family (.1.2) Lus10014431 [exp] 232 / 3e-76 AT3G09630 175 / 1e-54 Ribosomal protein L4/L1 family (.1.2) Lus10014430 [exp] 129 / 5e-37 AT5G02870 103 / 7e-28 Ribosomal protein L4/L1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132450 [exp] 685 / 0 AT3G09630 617 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.006G132551 [exp] 683 / 0 AT3G09630 612 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.016G084400 [exp] 661 / 0 AT3G09630 585 / 0.0 Ribosomal protein L4/L1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [flax] [poplar] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Lus10019903 pacid=23163981 polypeptide=Lus10019903 locus=Lus10019903.g ID=Lus10019903.BGIv1.0 annot-version=v1.0 ATGGCTGCAACCGCCGCCGCACGTCCGCTCGTCTTCGTCCAAACCCTCCAGGTCCTCAATGACATGTCCACCGATTCGATAACCACCGTACACCTCCCCG ACGTAATGCGATCCTCCATCCGTCCCGACGTTGTCAACTTCGTCCACGCCCAAATGTCAAACAACAGCAGGCAGCCTTACGCTGTCTCCAAGAAGGCCGG TCACCAGACCTCTGCCGAGTCATGGGGTACCGGCCGTGCAGTATCCCGTATCCCTCGTGTCTCCGGTGGGGGAACTCACCGAGCCGGCCAGGGAGCCTTC GGGAACATGTGCCGTGGTGGCCGTATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGGAGGATCAACGTCAACCAGAAGCGGTACGCAGTAGTAT CCGCGATCGCCGCTTCAGCTGTGCCTTCTCTGGTGATGGCTCGCGGCCACCGGATCGACACTGTTCCCGAACTGCCCCTGGTGATCAACGATTCCGCGGA GGGAGTCGAGAAGACTTCCACAGCCATCAAGGTGTTGAAGGAGATCGGTGCTTATGCTGACGCCGAGAAGGCCAAGGATAGCCAAGCTATTCGCGCAGGG AAAGGTAAGGCGAGAAACCGTAGATACGTATCTCGTAAGGGGCCATTGGTTGTCTACGGTAATGAAGGTGCTAAGCTGGTTAAGGCATTCCGTAACATTC CTGGTGTGGAGATTGCCAATGTGGAACGCCTCAACCTTTTGAAGCTGGCTCCCGGTGGTCATTTAGGTCGGTTTGTGATCTGGACCAAGTCCGCTTTTGA GAAGCTTGATTCTATCTATGGAACTTTTGAGAAGGCTTCGGAGAAGAAGAATGGTTATGTTTTGCCCAGGGCTAAGATGGTGAATGCTGACCTTGCTAGG ATTATCAACTCCGATGAGGTTCAGTCTGTGGTGAAACCCGCCAACAAGGAAGTTAAGAGGGCGACCCTGAAGAAGAATCCATTGAAGAACTTGAACGTGA TGTTTAAGCTTAACCCGTATGCCAAGACCGCTAGGAGGATGTCCTTATTAGCTGATGCTCAGCGCGTTAAGTCTAAGAAGGAGAAGCTTGACAGGAAGAG GACTCCCATTAGCAAGGAAGAAGCAAGTGCAATCAAGGCTGCTGGAAAGGCATGGTACAAAACAATGGAATCGGAAAGCGATTACTCAGAGTTCGAGATT TTCTCCAAATGGCTCGGTGCATCGCAGTAA
AA sequence Show only first row Show all	>Lus10019903 pacid=23163981 polypeptide=Lus10019903 locus=Lus10019903.g ID=Lus10019903.BGIv1.0 annot-version=v1.0 MAATAAARPLVFVQTLQVLNDMSTDSITTVHLPDVMRSSIRPDVVNFVHAQMSNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQGAF GNMCRGGRMFAPTKIWRRWHRRINVNQKRYAVVSAIAASAVPSLVMARGHRIDTVPELPLVINDSAEGVEKTSTAIKVLKEIGAYADAEKAKDSQAIRAG KGKARNRRYVSRKGPLVVYGNEGAKLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGTFEKASEKKNGYVLPRAKMVNADLAR IINSDEVQSVVKPANKEVKRATLKKNPLKNLNVMFKLNPYAKTARRMSLLADAQRVKSKKEKLDRKRTPISKEEASAIKAAGKAWYKTMESESDYSEFEI FSKWLGASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019903 [exp]	0	1
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	2.4	0.9529
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	3.5	0.9484
AT1G73240			unknown protein		Lus10042457 [exp]	3.7	0.9323
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	4.0	0.9472
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	4.7	0.9488
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10026904 [exp]	6.5	0.9440
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	8.9	0.9467
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10040546 [exp]	12.7	0.9366
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	13.0	0.9330
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	15.7	0.9384

Compare expression of checked genes

Lus10019903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.