Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09630 465 / 3e-164 Ribosomal protein L4/L1 family (.1.2) AT5G02870 457 / 3e-161 Ribosomal protein L4/L1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026476 [exp] 565 / 0 AT3G09630 678 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10019903 [exp] 563 / 0 AT3G09630 674 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10014014 [exp] 563 / 0 AT3G09630 510 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10014431 [exp] 211 / 2e-68 AT3G09630 175 / 1e-54 Ribosomal protein L4/L1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132450 [exp] 493 / 3e-175 AT3G09630 617 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.006G132551 [exp] 493 / 3e-175 AT3G09630 612 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.016G084400 [exp] 469 / 5e-166 AT3G09630 585 / 0.0 Ribosomal protein L4/L1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [flax] [poplar] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Lus10019904 pacid=23164068 polypeptide=Lus10019904 locus=Lus10019904.g ID=Lus10019904.BGIv1.0 annot-version=v1.0 ATGGGGTACCGGCCGTGCCGTTTCGCCTATTCTTCGTGTTTCTGTCGTGGTGGACGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACAGGAGGA TCAACGTCAACCAGAAGCGATACGCTGTCGTTTCCGCGATCGCCGCATCTGCCGTGCCTTCTCTGGTGATGGCGCGCGCCCACCGGATTGACACTGTTCC TGAATTGCCCCTGGTGATCAACGATTCCGCGGAGGGTGTCGAGAAGACTTCCACCGCCATCAAGGTGTTGAAGGAGATCGGAGCTTATGCCGACGCCGAG AAGGCCAAGGACAGCCAGGCGATCCGCGCCGGGAAAGGTAAGGCTAGGAACCGTAGATACGTATCTCGTAAGGGACCATTGGTTGTTTACGGTAATGAAG GTGCTAAGCTGGTTAAGGCCTTCCGTAACATTCCTGGTGTTGAGATCGCCAATGTGGAACGCCTCAACCTTTTGAAGCTGGCTCCTGGTGGTCATTTGGG ACGGTTTGTGATCTGGACCAAATCTGCTTTTGAGAAGCTTGACTCGATCTATGGATCGTTTGAGAAGGCTTCGGAGCAGAAGAATGGTTATGTCTTGCCC AGGGCCAAGATGGTGAATGCTGACCTTGCTAGGATCATCAACTCCGATGAGGTTCAGTCTGTGGTGAAACCCGTCAACAAGGAAGTTAAGAGGGCCACGC TGAAGAAGAATCCATTGAAGAACTTGAACGTGATGCTTAAGCTTAACCCGTATGCCAAGACTGCTAGGAGAATGTCATTGTTGGCTGACGCCCAGCGCGT TAAATCTAAGAAGGAGAAGCTTGACAGGAAGAGGACTCCCATTAGCAAGGAGGAAGCAAGTGCAATCAAGGCTGCTGGGAAGGCATGGTACAAAACAATG GAATCAGAAAGCGATTACTCAGAGTTCAGTAAAACGAATTCAGCTACTTTATTTGTTGTTTTGTCAAAGCTCTTTAGAAGTTTTCGAAGTTGGATTGTAG TAGAGATTTTGATGTTGGCGAATGGAATGGTTACTCGAGGAGTAGGAGATTCCATTACTCTCTCTGATATACTCTTGTGTTATTATTAG
AA sequence Show only first row Show all	>Lus10019904 pacid=23164068 polypeptide=Lus10019904 locus=Lus10019904.g ID=Lus10019904.BGIv1.0 annot-version=v1.0 MGYRPCRFAYSSCFCRGGRMFAPTKIWRRWHRRINVNQKRYAVVSAIAASAVPSLVMARAHRIDTVPELPLVINDSAEGVEKTSTAIKVLKEIGAYADAE KAKDSQAIRAGKGKARNRRYVSRKGPLVVYGNEGAKLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKASEQKNGYVLP RAKMVNADLARIINSDEVQSVVKPVNKEVKRATLKKNPLKNLNVMLKLNPYAKTARRMSLLADAQRVKSKKEKLDRKRTPISKEEASAIKAAGKAWYKTM ESESDYSEFSKTNSATLFVVLSKLFRSFRSWIVVEILMLANGMVTRGVGDSITLSDILLCYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	0	1
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	1.0	0.9556
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	3.0	0.9525
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032962 [exp]	4.5	0.9439
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	7.3	0.9501
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	7.3	0.9542
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10027408 [exp]	8.7	0.8993
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	8.9	0.9333
AT2G27710			60S acidic ribosomal protein f...		Lus10006270 [exp]	9.4	0.9138
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10031021 [exp]	9.7	0.9515
AT1G27090			glycine-rich protein (.1)		Lus10036699 [exp]	10.2	0.9090

Compare expression of checked genes

Lus10019904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.