Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09640 392 / 1e-139 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT1G07890 350 / 4e-123 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT4G35000 311 / 2e-107 APX3 ascorbate peroxidase 3 (.1) AT4G35970 278 / 4e-94 APX5 ascorbate peroxidase 5 (.1) AT4G08390 201 / 5e-63 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT1G77490 202 / 8e-63 TAPX thylakoidal ascorbate peroxidase (.1) AT4G32320 118 / 1e-31 APX6 ascorbate peroxidase 6 (.1) AT4G17690 73 / 8e-15 Peroxidase superfamily protein (.1) AT4G16270 70 / 8e-14 Peroxidase superfamily protein (.1) AT5G42180 66 / 2e-12 PER64 peroxidase 64, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013537 [exp] 367 / 9e-130 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 366 / 1e-128 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10014128 [exp] 305 / 7e-105 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 304 / 1e-103 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10000180 [exp] 274 / 1e-92 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 253 / 4e-84 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10025680 [exp] 203 / 4e-63 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 186 / 2e-56 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10002916 [exp] 122 / 2e-33 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084800 [exp] 396 / 3e-141 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G132200 [exp] 393 / 3e-140 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G015400 [exp] 381 / 2e-135 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.005G112200 [exp] 303 / 4e-104 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.004G174500 [exp] 299 / 1e-102 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 298 / 6e-102 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.002G081900 [exp] 202 / 3e-63 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.005G179200 [exp] 203 / 4e-63 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.006G089000 [exp] 164 / 2e-51 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G254500 [exp] 122 / 6e-33 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10019906 pacid=23164019 polypeptide=Lus10019906 locus=Lus10019906.g ID=Lus10019906.BGIv1.0 annot-version=v1.0 ATGGGGGAGAAGTGTTACCCGAAAGTGAGCGCGGAGTACGAGAAATCAGTGATGAAATGCAAGCGGAAGCTGAGAGGCCTCATCGCTGAGAAGCACTGTG CTCCAATCGTCCTCCGACTAGCATGGCACTCTGCTGGAACGTTCGATGTTGAAACCAAGAGCGGAGGTCCGTTTGGGACGATCCGGCATCAGGAAGAGCT TGCCCACCAAGCCAACAACGGGCTTGACATTGCGGTCAGGCTCTTGGAGGCCATCAAGGAGCAGTTCCCCATCTTAACCTACGCCGATTTCTACCAGCTG GCTGGAGTTGTGGCAGTGGAGATTACCGGAGGCCCGGAGATCCCTTTCCATCCCGGACGGCCGGACAAACCTGAGCCGCCCCCAGAAGGACGCTTGCCTC AGGCCGATGGAGGGTCAGCCCATTTGAGACAAGTGTTCTACAGAATGGGTATGAATGACAAAGACATAGTTGCTCTATCCGGCGGCCACACCTTGGGTAG GTGCCATAAGGAACGTTCGGGTTTCGAAGGACCCTGGACTGCCAACCCTTTAATCTTTGATAACTCCTACTTCAGGGAATTATTGAATGGGGAGAAAGAG GGTTTGATTCAGCTGCCATCTGACAAGGCTCTTCTGGAGGATCCTGCATTTCGTCCCCTTGTCCAGAAATATGCTCATGATGAGGATGCTTTCTTTGAAG ACTATGCTGAAGCTCATTTGAAACTCTCGGAGCTCGGGTGA
AA sequence Show only first row Show all	>Lus10019906 pacid=23164019 polypeptide=Lus10019906 locus=Lus10019906.g ID=Lus10019906.BGIv1.0 annot-version=v1.0 MGEKCYPKVSAEYEKSVMKCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVETKSGGPFGTIRHQEELAHQANNGLDIAVRLLEAIKEQFPILTYADFYQL AGVVAVEITGGPEIPFHPGRPDKPEPPPEGRLPQADGGSAHLRQVFYRMGMNDKDIVALSGGHTLGRCHKERSGFEGPWTANPLIFDNSYFRELLNGEKE GLIQLPSDKALLEDPAFRPLVQKYAHDEDAFFEDYAEAHLKLSELG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Lus10019906 [exp]	0	1
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10018825 [exp]	1.4	0.8727
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	2.6	0.8902
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	5.7	0.8538
					Lus10004431 [exp]	5.9	0.8492
AT3G02125			unknown protein		Lus10013196 [exp]	6.0	0.8577
					Lus10005955 [exp]	8.8	0.8443
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	15.2	0.8344
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	18.6	0.7996
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	25.3	0.8329
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	25.3	0.8130

Compare expression of checked genes

Lus10019906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.