Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37050 1319 / 0 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 848 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51880 457 / 9e-147 RHS6 root hair specific 6 (.1) AT1G51860 454 / 1e-145 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 453 / 3e-145 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 451 / 4e-144 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 448 / 2e-143 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 448 / 3e-143 Leucine-rich repeat protein kinase family protein (.1.2) AT2G28960 446 / 9e-143 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 442 / 6e-141 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023166 [exp] 1572 / 0 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 1549 / 0 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 849 / 0 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 845 / 0 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025849 [exp] 442 / 8e-141 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 430 / 1e-135 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025926 [exp] 365 / 1e-111 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 342 / 1e-103 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 299 / 3e-90 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084900 [exp] 1463 / 0 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 1463 / 0 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 877 / 0 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 861 / 0 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G004700 [exp] 423 / 2e-133 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094700 [exp] 421 / 8e-133 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 408 / 5e-128 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 404 / 3e-126 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G242700 [exp] 394 / 2e-122 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094200 [exp] 323 / 1e-100 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019907 pacid=23164079 polypeptide=Lus10019907 locus=Lus10019907.g ID=Lus10019907.BGIv1.0 annot-version=v1.0 ATGGAGACGAATCTGCTTCTACTCCTCTTCATTCTCCTCTTCTCTTCAGTTCTTCTCCGGCGCCACGGCGCCTCAGCTCAGAAGCCAGGATTTGTGAGTT TGGATTGCGGGGGTGAAGGAAATTATACGGATGAACTGGGCTTGCAATGGTCTTCTGATAATCATCTTGCGTTTGGAGAAACTGCAAAAATATCTGTTGC AAATGAGACAAGGAGGCAATACTTAACGCTGAGGCACTTCCCTGCGGATTCAAGGAAGTACTGTTATACATTGGGCGTCACCAGCAGGACGAGGTATCTC TTGAGAGCGACTTTCCTGTATGGTAACTTGGACAGCAATGTTTATCCAAAATTTGATGTATCTGTTGGAGCTACTCGCTGGTCAACCATTGTCATTTCTG ATGCTAATACAATAGAGTCTATAGAGCTCATATTTCTGGCTTCAACTCCTAACATCAGTGTGTGCTTATCCAATGCTACAACTGGGCAGCCTTTTATATC CACCCTCGAGCTCCGACAATTCAATGGTTCGGTTTACTATACACCAGCTGAAAACCAGTTTTACCTCAGTGTCTCAGCGAGAATCAATTTTGGGGCAGAT ACTGCAGCTCCCGTCAGGTATCCTGATGACCCGTTTGATAGAATATGGGAATCTGACTCGCTGAAGAAAGCAAACTATCTTGTTGATGTAGCAGCTGGTA CTAGGAAAGTGACCACTAAGATGCCAATTGCTGTAAACCGAGATGAAATGCCTCCCCAGAGAGTGATGCAGACAGCTGTAGTTGGTACAAATGGATCACT AACCTATCGGCTGATCCTGGATGGATTTCCTGGTTTTGGTTGGGCTTTTACCTACTTGGCTGAAATTGAAGATTTGCTTCCACAAGAATCCAGAAAGTTC AGACTAGTACTTCCAGAAAACCCTGAGCTAAGCAAAGCCATTGTAAACATCCAAGAGAATGCTCAAGGGAAATACCGTCTCTATGAACCGGGATATACCA ATATATCATTCCCCTTCGTGTTGTCTTTTAGATTTGCTAAGACATCCGATTCGACCAAGGGACCACTCTTGAATGCCATGGAGATAAACAAGTACCTAGA GATCAACCATGGATCCGCAGATGGAGATGCCATCTATAATGTGATTTACCTTAATCCTTCAGCGGATTGGGCAAAAGAAGGTGGTGACCCATGTCTTCCA GTTCCTTGGTCATGGGTGAAATGTAATTCTGATAAACAACCAAGAATAACTAAACTCTCCTTGTCTAGTAAGAATTTGAATGGGAATATTCCTTCAGATT TAACAAAATTGACTGGCTTGGTTGAACTTTGGCTTGATGGGAACTCGCTCACTGGGCCAATTCCTGATTTTAGCAGATGTCCAAACCTGGAGATCATTCA TCTGGAGAATAATCAGTTGACAGGCCAGCTGCCCTCGTATTTAACAGAGTTACCGAATCTTAGGGAACTGCACGTCCAAAACAATATGTTATCTGGAACA GTACCATCGGGCCTCGTCGTTAAAAATATAGCATTTAATTATTCAGGAAATATCAATCTTCATGAAGAGCCTGGAAGATCAAAACACATGAATGCTATCA CCGTTTCAGCAGTTGGAGCAGCTGCTGTTCTTCTTCTAGTAGCTATTGTTGGAGCTTGCATATCGAAGCAGAAATGGAAGAAAAACCATCCTGATCAAGG AACCTTGCCCGTCCAAAAGGTGGTTTCTGGTTTAAGTGATGCTCCTGCAGAAGCTGCACATCACTTTACTGCATCTGAGATTCTAGAAGCAACCAAAAAT TTAGAGAAGAAAATCGGCTCCGGAGGTTTTGGAGTTGTTTACTACGGAAAAACAAAGGACGAAAAGGAAATTGCTGTTAAAGTCCTGACAAACAATTCAT ACCAGGGCAAACGAGAGTTTGCAAATGAGGTCACTCTCCTCTCCAGGATACACCACAAAAATTTGGTACAGTTTCTCGGGTACTCCCAAGAAGAAGGCAG GAGTATGCTTATTTATGAATACATGCACAATGGAACTCTAAAAGAACATCTTTATGGGCCTCTAACGCAAGGAAAGAATATCAATTGGATCCAGCGCCTA GAGATTGCTGAGGATGCTGCAAGAGGGATTGAATACCTTCACACAGGCTGCGTCCCAGCAATCATCCACAGGGATCTCAAAACCAGCAATATTCTTCTCG ACAAACACACGAGAGCAAAAGTATCAGATTTCGGCCTTTCGAAAATTGCAGCTGATGGAGCTTCTCATGTCTCGAGCATTGTTCGAGGCACCGTTGGCTA TTTGGATCCCGAGTATTATATCTCTCAACAACTAACGGATAAGAGCGACGTTTATAGCTTTGGTGTCATTCTCCTGGAGCTCATGTCTGGTCAAGAGGCC ATATCCAGTGAAAGCTTCGGCGTTAATTGCCGTAATATTGTTCAATGGGCAAAGCTACACATTCAGAGTGGCGATATCCAAGGGATCATCGATCCGATAC TGGGCGACGAATACGACATACAGTCGATGTGGAAGATAGCAGAGAAGGCTCTGATGTGTGTCCAGCCACATGGACACATGAGGCCGTCGATTTCCGAAGT TCTAAAGGAGGTCCAGGATGCCATCTTGATCGAAAGGGAGACCAAGGCAGCGAGAGAAGGCGTTTCAGACGACATGTCGAGAACTTCGGTTCACTCTTCT CTCAACTTAGCCTCCCTTGACATGCCCGGCGGAGCTGAGAATTTCCTCTCGTTGGATGATTCCATTACTAGGCCAACAGCAAGATGA
AA sequence Show only first row Show all	>Lus10019907 pacid=23164079 polypeptide=Lus10019907 locus=Lus10019907.g ID=Lus10019907.BGIv1.0 annot-version=v1.0 METNLLLLLFILLFSSVLLRRHGASAQKPGFVSLDCGGEGNYTDELGLQWSSDNHLAFGETAKISVANETRRQYLTLRHFPADSRKYCYTLGVTSRTRYL LRATFLYGNLDSNVYPKFDVSVGATRWSTIVISDANTIESIELIFLASTPNISVCLSNATTGQPFISTLELRQFNGSVYYTPAENQFYLSVSARINFGAD TAAPVRYPDDPFDRIWESDSLKKANYLVDVAAGTRKVTTKMPIAVNRDEMPPQRVMQTAVVGTNGSLTYRLILDGFPGFGWAFTYLAEIEDLLPQESRKF RLVLPENPELSKAIVNIQENAQGKYRLYEPGYTNISFPFVLSFRFAKTSDSTKGPLLNAMEINKYLEINHGSADGDAIYNVIYLNPSADWAKEGGDPCLP VPWSWVKCNSDKQPRITKLSLSSKNLNGNIPSDLTKLTGLVELWLDGNSLTGPIPDFSRCPNLEIIHLENNQLTGQLPSYLTELPNLRELHVQNNMLSGT VPSGLVVKNIAFNYSGNINLHEEPGRSKHMNAITVSAVGAAAVLLLVAIVGACISKQKWKKNHPDQGTLPVQKVVSGLSDAPAEAAHHFTASEILEATKN LEKKIGSGGFGVVYYGKTKDEKEIAVKVLTNNSYQGKREFANEVTLLSRIHHKNLVQFLGYSQEEGRSMLIYEYMHNGTLKEHLYGPLTQGKNINWIQRL EIAEDAARGIEYLHTGCVPAIIHRDLKTSNILLDKHTRAKVSDFGLSKIAADGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELMSGQEA ISSESFGVNCRNIVQWAKLHIQSGDIQGIIDPILGDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEVQDAILIERETKAAREGVSDDMSRTSVHSS LNLASLDMPGGAENFLSLDDSITRPTAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37050			Leucine-rich repeat protein ki...		Lus10019907 [exp]	0	1
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	1.7	0.8264
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	2.2	0.8558
AT3G26950			unknown protein		Lus10035181 [exp]	3.2	0.7912
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	3.7	0.8294
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10019155 [exp]	4.5	0.8247
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	7.4	0.7909
AT5G06850			C2 calcium/lipid-binding plant...		Lus10037480 [exp]	9.2	0.8180
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	10.0	0.7535
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	15.3	0.8059
AT5G02920			F-box/RNI-like superfamily pro...		Lus10037289 [exp]	15.5	0.7746

Compare expression of checked genes

Lus10019907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.