Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02880 1531 / 0 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 608 / 0 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT3G17205 155 / 5e-38 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT1G70320 157 / 6e-38 UPL2 ubiquitin-protein ligase 2 (.1) AT1G55860 156 / 1e-37 UPL1 ubiquitin-protein ligase 1 (.1.2) AT3G53090 124 / 3e-28 UPL7 ubiquitin-protein ligase 7 (.1.2) AT3G06720 52 / 2e-06 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 51 / 6e-06 IMPA-2 importin alpha isoform 2 (.1.2) AT5G49310 50 / 1e-05 IMPA-5 importin alpha isoform 5 (.1) AT4G02150 49 / 3e-05 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027841 [exp] 628 / 0 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10005068 [exp] 615 / 0 AT4G38600 2305 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10032589 [exp] 147 / 8e-35 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032830 [exp] 145 / 2e-34 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 145 / 2e-34 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 107 / 8e-23 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10017098 [exp] 96 / 2e-19 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10008636 [exp] 81 / 1e-14 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10037820 [exp] 76 / 3e-13 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085200 [exp] 1994 / 0 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.006G132000 [exp] 1993 / 0 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.004G174700 [exp] 621 / 0 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.009G134300 [exp] 612 / 0 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.011G094100 [exp] 153 / 7e-37 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 150 / 4e-36 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.010G150000 [exp] 143 / 3e-34 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.002G110500 [exp] 144 / 4e-34 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.008G101300 [exp] 138 / 2e-32 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G096500 [exp] 115 / 1e-25 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10019908 pacid=23163994 polypeptide=Lus10019908 locus=Lus10019908.g ID=Lus10019908.BGIv1.0 annot-version=v1.0 ATGAAAATAATCGTGGATAAACCCATCTTAACCACTCTCGAAATTTATGATATTTTATTATACCATCTCATTTCGGAAAGGATACTGGGAATGGGGAACC GTGGGCAAAAGCGGTCTGAGGTTATTGATGAATTGCCAGCTGACAAGAGAGCTTGCAGTTCATTGGATTTTAGACCCAGTTCATCTAATTCCTCAGTGCA GGCACAGATGACCGACGCACCTGATGCCAATGCTGCGGAGACCCCTGTTGCTGACATGGATACTTCTTCTTCTCATTCTGCTTCTAGCCAATCGGAGGAA GAACATGAGAGGGATTCTGCTTATGGATCGTGTGACTCAGATGATGCGGATCCAAGGCAGAGCAGCCTGCGTAATTATCAGAGGCAAAGGTCATCCGGTG ATCACGGTAGACTAAGGAGTATTTTGACCAATATGAATGAAGGAAGTGAATCCTCTGCCAAGTTAGCTACACTCACGCAGTTGTGTGAAGTGCTGGCATT TTGCACCGAGGATTCACTTTCAATTGTGATGGCAGATTCGTTATCCCCAGTTCTTGTTAGGTTTGCTAGAGATGAGAGTAACCCTGACATAATGCTCTTG GCCATAAGGGCTTTAACTTATTTGTGTGATGTTTTCCCTCGGGCATCTAGTTTTCTTGTTGGACATGAGGCTGTTCCTGCTCTTTGTCAGAGATTAATGA ACATTGAATACCTAGATGTCGCTGAACAGTGTCTGCAAGCATTGGAGAAAATCTCACGCGATCAACCACTCCCTTGCTTACAGGCTGGGGCTGTCATGGC TGTTCTAAGTTATATAGACTTCTTTTCGACAAGTGTGCAAAGAGTTGCTTTGTCAACAGTGGTTAATGTATGTAAAAAACTGCCAACAGAATGTCCTCCC CCTCTCATGGAGGCTGTTCCTATATTGTGCAATCTCTTGCAGTATGAAGATCGACAGCTTGTTGAAAATGCAGCCTCTTGCTTGATCAAAATAGTCGAGC GAGTTAGTCATTCTTCTGAGATGTTGGATGATCTGTGTAAGCATGGGCTAATAAATCAGGCTACACATTTGGTACAAGTGAATGGAAGAACTACTTTATC CCAGCCAATATATATTAGCATGATTGGGCTCCTTGCTAAATTATCATCTGGTTCACTTAATGCTTTCAAGGCTCTATATGATCTTAATATAAGCAGTATT CTTAAGGAGATATTAGCAAATTATGACCTTTCTCATGGAATCTGCTCTCCTCATGTGGTTGATGGGCAAGGCAACCAGGTACACGAAGTTCTAAAGTTGC TGATTGAGCTTCTACCTTCAGTAACAGGAGACCAAGATGTTCAACAACAGTTGTCGGATAAGCATTCATATCTTAATGATCATCCTAATCATCTGCATAG ATTGGGGTCAGACATCATTCCCCTGCTGGTCCAGGTGGTTAATTCTGGTGCAAATTTGTATGTCTGCTATGGCTGCCTAACTGTCATCAACAAGTTAGTT TACTTGTGCAAAGCTGACATGCTTGCTGGTTTGCTTATGGATGCAAACGTACCAAGTTTTATAGCTGGTGTCTTTACTCGAAAGGATATCCATGTACTGG TTTTAGCCCTGCAAATTGCGGAGAGAATTTTGCAGAAGGTTCCAGAAGTTTGTCTGAACTCTTTCATTAAGGAGGGCATCTTTTTTGCGATTGATGCCCT TCTAGATCCTGACAAATGTTCAAGTTCGATTTTCCCTGGGTCCAATGGCTTTCAGCTGCCGTTTGACTCAGGTCAAAGGCCTCCTTCAAAGACTACACTA AGGTGCTTATGTTATTCTTTTGATACCAATCAGTCTCCCTCAAGTTCAGAAGCTGGAGCATGCAAGCTTGAAAAGGACAGTGTTCAAACTCTTGCAAGGC ACATAAGAGGCAGTTACTTTACTCCAGGATTGGATGATTCTGACAAGGGGATGACAGATATTCTCCAAAATCTCCGTGCTATGTCTATTGCTTTGGATGG TTTAATGAGTAAAGATGATTTTGTTCTTGTTACTCGTGGCGAGGAGAGCTCTGATAGGTTACTGCAAAAAATTATGGGGAAGCTTAGCGGAAAAGAACCC GTCTCGACCTTCGAGTTTATCGAGAGTGGGATTGTAAGATCATTGGCGAGTTATTTGTCAAAGGGTTTGTACTTCAGAGAAAAGATGGCACCACCAGCTG AACGTGATTACATCCATGCTATAGAAAGGTCCGGGGTACTTGCCAGGGTATTTTCATTATCCACGGATCATAAGGAAGGGTTGATGATATCATTATTTAT ACAAAAATTGCAAAATGCATTATCATCGTTGGAAACTTTTCCAGTCATTTTAAGCCAACCATTCAAGCAAAGAAATTTCTTTGCCACAGTTCCTCATGGA CGCGTCGCGCCCTACCCATGCTTGAGAGTTCGTTTCAAAAAGGATAAAGAGGAGATGCTCATTCGTGACTACTGTGAAGATGTCGTATCTGTTGACCCTT TTGCTTCTCTGAATGCTATTCAAGGATTTTTGTTGCCTAAGGTTAGTATAAGAATGACAGATCAAGCACAATCAGCTGCCCAGGCTTTGGAGCCAATGGA AGGTGTAGAACTCCAAGTACCATTGAACGGAAGCTCTGGTCAAGTAGAAAGTTCAGGGACAGTGGAAGCTGACAACACAACTGAAGATCAGGCTAAGCTA TCTCAACCTCCATCTGAAAATGGTGGAAATCTGCAGCAGAGAAGGGCCAGTCAATCATCATCTGCAATCAATGACCTTAGTGTGAGTCGACTCTTGTCTC GAAAAACAGTGGACCTCAACTCTGCAAGTTGCGTTCCTGTGTATCAGGATTCTGTCGAACCGGGGGGGCATTCTCCTTTAAGGAGAGGAGTGGGATCCGA AAGTTGTTTTTCTGCATCTCCTCGCGACGAAGAAGGTTTGCTTGATCTGGCTTTCTACATGGACGGGCAACAGCTAGACCAGACTTTAACACTGTACCAA GCAATTCTTCAACAGAAGATTAGATCAGACCTTGAAATTAATGTCAGTGCAAGCTTTTGGAGTCAAGTATACACAATTACATACAGGGTAGCTTCCGAGT CTGGTGATGGAAGTTGTCAAGGCACTCAGGGCTCACTTCGACCAGCTTCCATTTTGGGGAAAAATGAAGCTGGTTTGCAGTACGTGTCATATTTCCATGC CATGTTTGGTTCTGAGCTAGTCTCTGATGTGGATAAATCAAGTCCTACTTATGATATATTGTTTCTTCTCAAATGCTTGGAAGGCCTCAACAGGTGCACC TTTCATCTAATGTCTCGTGAAAGAATGCATTCTTTTGCCAAAGGGTTAGTACACAACTTCGATGATATCAAGGTGGTTGTTAATTCAGCATCACAGAATG AGTTTGTTAACACTAAATTGACTGAAAAACTTGAGCAGCAGATGAGAGATTCTATAGCACTTTCAACAGGTGGGTTACCTCTGTGGTGCAATCAGCTAAT GGCTTCATGCCCCTTTCTGTTTGGATTTGAGGCAAGATGCAAGTACTTCCGTCTATCAGCCTTTGGTACTCAGAGAATTTTGTCACAGCTGCAACCACAT AATAATTCAGGCCTATCAAGAGACAGGCGACTACTTACTGGTAATTTGCATCGTAAAAAGTTCTTGGTATCTCGTGATCAAATTCTGGAGTCTGCAGCAC GTATGATGGAGCTTTATAACAATGTTAAAACACCCATTGAAATTGAGTATAATGAAGAAGTTGGTACTGGTCTTGGCCCAACATTGGAGTTCTATACTCT GGTCGCTCGTGAATTTCAAAAGTCTGATCTTCTTATGTGGAGAGGAAAACATTTTTCATCCACAGTGAAAGATGTGTCCCCAATTGGACTTTTCCCTTGC CCAATTCCACCTATGATGGATGCAGCTAACGGAATACAATTTTCTGAGATTAGTAAGAAGTTTGTCCTCTTGGGACAAGTCGTGGCAAAAGCTCTTCAAG ATGGAAGAGTCTTGGATCTTCCATTCTCCAAAGCTTTCTATAAGCTTATTCTTAATCAGGAACTTAATATATGCGACATCCCTTCTTTTGACCCTGAGCT GGGTAGGACATTGCTAGAGTTTCAGGCACTATTCAACAGGAAAAAGCTTTTGGAATCAAATGTTGGAGATAACTCATCTTCCAATTTTGATGGATGCTTC CGGAACACTAGAATTGAGGATCTCTGTCTTGACTTTACTCTTCCTGGCTATCCTGATTATGCTCTAGATGCCAATCAAGATAACAAAATGGTAAATATGG ACAACTTGGAGGAGTATGTTACTCTTGTGGTGGATGCTACTGTGTGCTCTGGAATTACTAGACAGACTGAAGCTTTCAAGTCTGGATTTAATCAGGTGTT TCCAATCGAACATCTCAAGATTTTCACAGAAGAAGAATTGGAGCGTCTACTATGTGGAGAGCCGGATTTTTGGAGTTGTAATGAGCTACTGGATCATATC AAGTTTGATCATGGATACACAGCAAGCAGTCCTCCAGTCGTAAACTTGCTAGAAATCATGCAGGAGTTTGATTACTCGAAGAGACGAGCATTCATCCAGT TCGTGACAGGGGCACCTCGACTTCCTCCAGGAGGTCTAGCATCCCTGAATCCTAAGCTGACTATTGTCAGGAAGCATTGCAGCATTTCCTCGGATGAAGA CCTACCCAGCGTGATGACCTGTGCTAATTACCTGAAGCTGCCTCCTTACTCATCCAAAGAGAAGATGAAGGAGAAACTTATATACGCGATAACAGAAGGG CAAGGATCGTTCCATCTTTCGTAG
AA sequence Show only first row Show all	>Lus10019908 pacid=23163994 polypeptide=Lus10019908 locus=Lus10019908.g ID=Lus10019908.BGIv1.0 annot-version=v1.0 MKIIVDKPILTTLEIYDILLYHLISERILGMGNRGQKRSEVIDELPADKRACSSLDFRPSSSNSSVQAQMTDAPDANAAETPVADMDTSSSHSASSQSEE EHERDSAYGSCDSDDADPRQSSLRNYQRQRSSGDHGRLRSILTNMNEGSESSAKLATLTQLCEVLAFCTEDSLSIVMADSLSPVLVRFARDESNPDIMLL AIRALTYLCDVFPRASSFLVGHEAVPALCQRLMNIEYLDVAEQCLQALEKISRDQPLPCLQAGAVMAVLSYIDFFSTSVQRVALSTVVNVCKKLPTECPP PLMEAVPILCNLLQYEDRQLVENAASCLIKIVERVSHSSEMLDDLCKHGLINQATHLVQVNGRTTLSQPIYISMIGLLAKLSSGSLNAFKALYDLNISSI LKEILANYDLSHGICSPHVVDGQGNQVHEVLKLLIELLPSVTGDQDVQQQLSDKHSYLNDHPNHLHRLGSDIIPLLVQVVNSGANLYVCYGCLTVINKLV YLCKADMLAGLLMDANVPSFIAGVFTRKDIHVLVLALQIAERILQKVPEVCLNSFIKEGIFFAIDALLDPDKCSSSIFPGSNGFQLPFDSGQRPPSKTTL RCLCYSFDTNQSPSSSEAGACKLEKDSVQTLARHIRGSYFTPGLDDSDKGMTDILQNLRAMSIALDGLMSKDDFVLVTRGEESSDRLLQKIMGKLSGKEP VSTFEFIESGIVRSLASYLSKGLYFREKMAPPAERDYIHAIERSGVLARVFSLSTDHKEGLMISLFIQKLQNALSSLETFPVILSQPFKQRNFFATVPHG RVAPYPCLRVRFKKDKEEMLIRDYCEDVVSVDPFASLNAIQGFLLPKVSIRMTDQAQSAAQALEPMEGVELQVPLNGSSGQVESSGTVEADNTTEDQAKL SQPPSENGGNLQQRRASQSSSAINDLSVSRLLSRKTVDLNSASCVPVYQDSVEPGGHSPLRRGVGSESCFSASPRDEEGLLDLAFYMDGQQLDQTLTLYQ AILQQKIRSDLEINVSASFWSQVYTITYRVASESGDGSCQGTQGSLRPASILGKNEAGLQYVSYFHAMFGSELVSDVDKSSPTYDILFLLKCLEGLNRCT FHLMSRERMHSFAKGLVHNFDDIKVVVNSASQNEFVNTKLTEKLEQQMRDSIALSTGGLPLWCNQLMASCPFLFGFEARCKYFRLSAFGTQRILSQLQPH NNSGLSRDRRLLTGNLHRKKFLVSRDQILESAARMMELYNNVKTPIEIEYNEEVGTGLGPTLEFYTLVAREFQKSDLLMWRGKHFSSTVKDVSPIGLFPC PIPPMMDAANGIQFSEISKKFVLLGQVVAKALQDGRVLDLPFSKAFYKLILNQELNICDIPSFDPELGRTLLEFQALFNRKKLLESNVGDNSSSNFDGCF RNTRIEDLCLDFTLPGYPDYALDANQDNKMVNMDNLEEYVTLVVDATVCSGITRQTEAFKSGFNQVFPIEHLKIFTEEELERLLCGEPDFWSCNELLDHI KFDHGYTASSPPVVNLLEIMQEFDYSKRRAFIQFVTGAPRLPPGGLASLNPKLTIVRKHCSISSDEDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEG QGSFHLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	0	1
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	2.0	0.8556
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	2.2	0.8565
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	3.9	0.8484
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	4.0	0.8318
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	7.9	0.8363
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	8.1	0.8407
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	9.6	0.8415
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	9.7	0.8074
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	12.4	0.8132
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	14.3	0.8099

Compare expression of checked genes

Lus10019908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.