Plant FIBer expression Database

Lus10019909 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53320 69 / 4e-12 unknown protein
AT2G37070 68 / 1e-11 unknown protein
AT5G60150 45 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026478
[exp]
649 / 0 AT3G53320 56 / 8e-08 unknown protein
Lus10023170
[exp]
221 / 8e-63 AT3G53320 133 / 1e-32 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G085600
[exp]
126 / 6e-30 AT3G53320 174 / 4e-46 unknown protein
Potri.006G131650
[exp]
124 / 3e-29 AT3G53320 146 / 1e-36 unknown protein
Potri.008G044500
[exp]
64 / 2e-10 AT2G38890 107 / 1e-25 unknown protein
Potri.010G217000
[exp]
50 / 7e-06 AT2G38890 92 / 2e-20 unknown protein
Potri.005G131500
[exp]
44 / 0.0006 AT5G60150 106 / 9e-23 unknown protein
PFAM info
Representative CDS sequence
>Lus10019909 pacid=23163974 polypeptide=Lus10019909 locus=Lus10019909.g ID=Lus10019909.BGIv1.0 annot-version=v1.0
ATGAGCGAGTTCCGCGAGAATTTCGGACCGGCAGATAACCCGCTGGGACTCATCGACGTCTCCTTCGAGGACGACTGCCTCTATTCCACTTCTTCCCCGC
CTCGCGACTTCCACTTTTCAGATGATTTATTGGACGCTGGAGATCCACTGTCCTTAAACATTACAGATTCGCCGAGTCGTCAGACGTCAGTTGGCGGAGA
TGATGTCCGGGAACCAGATGAGAGGAAAAAAAATCTGAAGTGCAATCTGCGCAAAAGTTTAGCCTGGGATAGCGCGTTCCTCAACAGTGCAGCAGGTGTT
CTAGAACCAGATGAGTTGTCTAGTATCGCTGGACAGACTGAGAGTAGAGGAATGTTACCTGGAATCAGAGAGGAGTTGGAAAGATCAACGGACTCATTAT
CTACCCTGTCAAGTGATGGGTTGACTATGGATAATCTTGAAGGTGACTTGTTTGGTGACATTAGAGCATCGATCCAGAAATCAAATGGATCCTCTGCTAC
GACGAAGTCCATGGCCAAGTCCCTTAGAACTGGATCTGGCATGGCTGCCAGCCAAATAAAACAATCTCCAAGAACAGTAGAGGAAGCTTCTCCAAACAAG
CCAAAAGCTAATGCTGCACTGAAGAAGCCAGTTACTGTCATCCCAGGATCACGAAGAACGTTGAAGTCAGCATCTTCTAGTGCACAAGCTCCCCAGGAAA
GTGCCTTTTACTTGATAATTGTGGAAGTGACTTTTATTAGTCTATCCAAAGGAACACTAAAACCCCCAACTTCTAGTGGTCCGAGTAATACTGTGTCCAG
GCTACGTCCACTTTCAGTTGCCTCCTCTTCATCCAGTCGTTCCGAAAGCATTTCATTAGACGGTAGCATCAAATCTTCAAAATCTGTTAGAAGAAATGTG
GCCCCGAGGACTGGTGTTCCATCTGGTAGCCTAATAGCTAAAGCCGCATCAAGAATCACTACGAAAAGTAAAAATCTCTCAACCATTCCACAACCTTCGC
TCTATCTCAAGTCTGCAGCCAAGCTCTCCCCAAGCATTTCACCAGCAAGTTCAGTTAGTGAATGGTCGTTAGATTCAGTGTCATTTTCACCAACTTCACC
TCTCAATAAGAGATCTAATTATTCAAGATCTAGCATTGGCTCGAGTTCCTGTGGAGACTACTGTTATCAAGATGACTGCAGCTCCCAGGTTTCGGATTCT
CAAAGCCATACTAGCGAAAACAGTGCAGTCAGCATCCAAAGTCTGTCATCAATTGGAAGGGTCTCAAATGAAAGTGGAGGACTTCACACAGATGTGGGCA
GGCGCTCAGGCCTCCGACTCCCATCGCCAAAGATCGGTTTCTTCGATGGGGGGAGATCATCATCAGCCTTAAAGTCGAACGGATATGTTCAACCGCAACC
AGGAGCACGAAGCGGAATACCTAGACCGGGGACAGTTGTTCAGGGAAAGCTAGGAAAGGTTCAAAATGCTAAAACAACCACTCCGGTGAAAAGTCCGAAG
ATAGGCACTCCAAAACAACCCTTGAGCTCCAAGTCGAAATCTCCATTGTCTCGTGAGGATCCTTCCAGTGCAGCTGCTGTACCAAAGGCTGGTAGCATTT
CAAAAAGCGCAACGCGGTCTCCGGGCATATCCCCGACGGTGCAAAACAAGATATCATCCGCTGGTGACGAAAATTTGAAGCCTATGAAGGTGACGCATAT
TGATGAAAGAAATGCTCCTAACGGGAAGGCCAGAAACCATGTTCTATCTGATGGAGAAGTTGCAGTTACAGAGTGCAACCACAAAGCTAGTGCTACAAGG
AAAGAACATGTGGAGGTTAGTAAAAGAGAGACGGCTTTACTTGAACAGTTGGGGGCTACGAATGTTCATAGCCACATAATGGAGGAAACTCCTGGCAAAG
CTCCTGTGATTGTGAACGCAGAAAGCTCATTGCCATTAGAGTGA
AA sequence
>Lus10019909 pacid=23163974 polypeptide=Lus10019909 locus=Lus10019909.g ID=Lus10019909.BGIv1.0 annot-version=v1.0
MSEFRENFGPADNPLGLIDVSFEDDCLYSTSSPPRDFHFSDDLLDAGDPLSLNITDSPSRQTSVGGDDVREPDERKKNLKCNLRKSLAWDSAFLNSAAGV
LEPDELSSIAGQTESRGMLPGIREELERSTDSLSTLSSDGLTMDNLEGDLFGDIRASIQKSNGSSATTKSMAKSLRTGSGMAASQIKQSPRTVEEASPNK
PKANAALKKPVTVIPGSRRTLKSASSSAQAPQESAFYLIIVEVTFISLSKGTLKPPTSSGPSNTVSRLRPLSVASSSSSRSESISLDGSIKSSKSVRRNV
APRTGVPSGSLIAKAASRITTKSKNLSTIPQPSLYLKSAAKLSPSISPASSVSEWSLDSVSFSPTSPLNKRSNYSRSSIGSSSCGDYCYQDDCSSQVSDS
QSHTSENSAVSIQSLSSIGRVSNESGGLHTDVGRRSGLRLPSPKIGFFDGGRSSSALKSNGYVQPQPGARSGIPRPGTVVQGKLGKVQNAKTTTPVKSPK
IGTPKQPLSSKSKSPLSREDPSSAAAVPKAGSISKSATRSPGISPTVQNKISSAGDENLKPMKVTHIDERNAPNGKARNHVLSDGEVAVTECNHKASATR
KEHVEVSKRETALLEQLGATNVHSHIMEETPGKAPVIVNAESSLPLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G53320 unknown protein Lus10019909
[exp]
0 1
AT1G43850 SEU SEUSS transcriptional co-regul... Lus10018933
[exp]
5.5 0.8156
AT3G53320 unknown protein Lus10023170
[exp]
8.7 0.8592
AT3G49600 SUP32, ATUBP26,... ubiquitin-specific protease 26... Lus10042726
[exp]
9.2 0.8647
AT2G43980 ATITPK4 "inositol 1,3,4-trisphosphate ... Lus10033768
[exp]
9.3 0.8162
AT3G54750 unknown protein Lus10016201
[exp]
11.4 0.8676
AT3G54650 FBL17 RNI-like superfamily protein (... Lus10024855
[exp]
14.6 0.8658
AT2G36010 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1... Lus10016972
[exp]
23.7 0.8440
AT1G76950 PRAF1 Regulator of chromosome conden... Lus10028600
[exp]
27.0 0.8454
AT3G27120 P-loop containing nucleoside t... Lus10012530
[exp]
29.3 0.8533
AT3G16490 IQD26 IQ-domain 26 (.1) Lus10043033
[exp]
29.7 0.8599

Lus10019909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.