Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42020 249 / 2e-79 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 249 / 8e-79 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 247 / 6e-78 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 221 / 4e-68 HSP70B heat shock protein 70B (.1) AT3G12580 214 / 2e-65 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 211 / 1e-64 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G02490 211 / 2e-64 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 209 / 2e-64 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 206 / 2e-62 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G37910 189 / 5e-56 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019915 [exp] 357 / 1e-121 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10026480 [exp] 336 / 4e-118 AT1G09080 234 / 2e-73 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10015483 [exp] 267 / 4e-86 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10029103 [exp] 265 / 2e-85 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007777 [exp] 254 / 5e-85 AT5G28540 358 / 8e-121 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 264 / 9e-85 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 260 / 4e-83 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10028061 [exp] 250 / 2e-79 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 248 / 2e-79 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 259 / 1e-82 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 249 / 1e-78 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 249 / 1e-78 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 245 / 3e-77 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 220 / 1e-67 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 214 / 1e-65 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 213 / 3e-65 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 212 / 8e-65 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 211 / 3e-64 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 210 / 5e-64 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10019911 pacid=23164057 polypeptide=Lus10019911 locus=Lus10019911.g ID=Lus10019911.BGIv1.0 annot-version=v1.0 ATGTTGAAGGTGAAAGCAGAGAAAATCGAAGAAGAAGATGTGAAGCTGGCGATATGCAAAGCCGGAGAAGGAGATGTTGTGATAGGGATTGATCTCGGCA CAACTTTCTCTTGCGTGGCCGTCGCAATCAACGGCAACGTCGAAATCACAGCCAACGATCAAGGCAACCGGACAACTCCTTCATTCGTTGCCTTCTCTGC CTTCAGTTCCGAGCGTCTCATCGGCGAAGCAGCCAAAAATCAGGCGACTCTCAACCCCCGCCGCACCGTTTTCGATGTAAAACACCTCGTCAGCAAGAAG TTCGACAACCCCGTGGTTCAAAAGGACATGCAATATTTGCCTTATTCCGTGGTCAACAGAGGTGCAAAGGCTTACGTGGAATTGGAGGTCAAAATTGGAG AAAAAGTCGAAGCATTCAGCCCGGAAGAAATCAGTGCCATGGTGTCGGGGAAGATGAAGGAAACCGCTGGATCTTATCTCGGAAAGCCGGTACACCGAGC CGTATTGACGGTGCCGGCTTACTTCAACGACGCACAGAGAGAAGCCACCAAGAACGCCGGCATAATCGCCGGCCTAGACGTCCTTCGTATAATCAACGAG CCTACTGCAGCCGCCCTAGCCTACGTATTCAAAGAACAAAAGAATCCTCTGAAGAGAAAGAGGACGACGGCCGCAAATATTTGGACTTTTTATCATCACC AAAGTTGA
AA sequence Show only first row Show all	>Lus10019911 pacid=23164057 polypeptide=Lus10019911 locus=Lus10019911.g ID=Lus10019911.BGIv1.0 annot-version=v1.0 MLKVKAEKIEEEDVKLAICKAGEGDVVIGIDLGTTFSCVAVAINGNVEITANDQGNRTTPSFVAFSAFSSERLIGEAAKNQATLNPRRTVFDVKHLVSKK FDNPVVQKDMQYLPYSVVNRGAKAYVELEVKIGEKVEAFSPEEISAMVSGKMKETAGSYLGKPVHRAVLTVPAYFNDAQREATKNAGIIAGLDVLRIINE PTAAALAYVFKEQKNPLKRKRTTAANIWTFYHHQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019911 [exp]	0	1
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025515 [exp]	27.7	0.7451
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	40.6	0.7239
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031817 [exp]	52.4	0.7422
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030569 [exp]	61.2	0.7081
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10025376 [exp]	75.7	0.7120
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10033669 [exp]	92.8	0.6670
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	101.2	0.7164
AT4G32600			RING/U-box superfamily protein...		Lus10008106 [exp]	110.0	0.6993
AT5G19970			unknown protein		Lus10043303 [exp]	118.2	0.6948
AT5G19875			unknown protein		Lus10024507 [exp]	142.8	0.6863

Compare expression of checked genes

Lus10019911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.