Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37080 239 / 3e-73 RIP3 ROP interactive partner 3 (.1) AT5G60210 213 / 2e-63 RIP5 ROP interactive partner 5 (.1.2) AT3G53350 92 / 3e-20 RIP4 ROP interactive partner 4 (.1.2.3) AT1G78430 75 / 7e-15 RIP2 ROP interactive partner 2 (.1) AT1G17140 62 / 2e-10 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026482 [exp] 660 / 0 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1) Lus10023173 [exp] 197 / 2e-58 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1) Lus10011643 [exp] 99 / 1e-23 AT5G60210 152 / 6e-43 ROP interactive partner 5 (.1.2) Lus10015064 [exp] 81 / 1e-16 AT2G37080 155 / 4e-42 ROP interactive partner 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085900 [exp] 380 / 2e-127 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.006G131400 [exp] 348 / 7e-115 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1) Potri.001G377900 [exp] 76 / 4e-15 AT1G78430 238 / 5e-76 ROP interactive partner 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019912 pacid=23163957 polypeptide=Lus10019912 locus=Lus10019912.g ID=Lus10019912.BGIv1.0 annot-version=v1.0 ATGGATTCAGCTGCCTTGGCGACTGCCATGAACGAAATCCAGCGGCTGAAGAATCTGCTGCAAGTTGTAGTGGCTGAATCTGAATCAGCACATGCTGAGT CAGAAATCGTCGAGACAATGAAATCTGAACTGTGTGATTATAGGAAGTCCGAAGCTGAGGCATTGGATGCTGTTAGCAAAGCTCGGAAGGAATTGGAAAC GAGTAATGCAAATGCTGAAAAGCTGCATGTGGATGGTATTAAGTCCGTGGAAGCTTGTGACCGGTTGGCGTTAGAGTTAGAGGAGTCGAAGGATCGAGTC AAGTCCTTGGAGGAGCTTGTGAGCAAACTGAAGGAAGATTCGGAATCAGAATCTCCTCCAGCGAGAACGCAAAATGAGGAGGAGATGAACTCTTTGAAAG CTGAAGTGTGTCAACTGAGAGCCGATCTCGAAGCTTCCGAGGCAAGGTACCAGGAGGAGTACATTCAGAGTACACTGCAGATACGAGGAGCTTATGAACA AGTTGAACAAATGAAGCAGGAGTTAGCGGAAAGAGAGGCATACATTGATGAATTGAAGGCCATTATAAAGGACAAAGAAGCTCCTCAGAAGGAAGGTGAT CTCGAGACCGATTTGAAGAAGTTGGAGTGTGAGTTCACAGAGTTGAAAGCAAGCCTGTTGGAGAAAGAGGCACAAGTTGAAAGCTTAGCTGAACAGAATG AGATGCTAAAGATGGAAACCAAGAGAGGTGAAGAAGAGAGGAGTAAATCCAACGACGAAGCAGCTGCTTTGGCCGAAACAGCAAAGGCAGCTGAGAGGGA AGCATTGATGAAACTTGGCTACATAACTGAGGAAGCAGATAAGAGCAGCAGGAGAGCAGCTAGGGTAACTGAGCAGCTCGAAGCATCCCAAGCTGCTAAC TCGGAAATGGAAAGTGAACTTAGGAGGTTGAAGGTGCAGGCAGATCAATGGAGGAAGGCAGCTGAAGCAGCTGCGGCCATGCTCTCTACAGAGAACAACA ATGGTGGGAAGTTCGTGGAGAGGACCGGTTCGCTTGATAATAATGTCAACTACACCACCATAGCTGGGGCAATGGTGGGCTCGCCTTTCTCGGAGGATAT GGATGATGAGTCGCTGAAGAAGAAGAATGGGAATGTGCTGAAGAAGATTGGCGTGTTGTGGAAGAAAGGTCAGAAGTAA
AA sequence Show only first row Show all	>Lus10019912 pacid=23163957 polypeptide=Lus10019912 locus=Lus10019912.g ID=Lus10019912.BGIv1.0 annot-version=v1.0 MDSAALATAMNEIQRLKNLLQVVVAESESAHAESEIVETMKSELCDYRKSEAEALDAVSKARKELETSNANAEKLHVDGIKSVEACDRLALELEESKDRV KSLEELVSKLKEDSESESPPARTQNEEEMNSLKAEVCQLRADLEASEARYQEEYIQSTLQIRGAYEQVEQMKQELAEREAYIDELKAIIKDKEAPQKEGD LETDLKKLECEFTELKASLLEKEAQVESLAEQNEMLKMETKRGEEERSKSNDEAAALAETAKAAEREALMKLGYITEEADKSSRRAARVTEQLEASQAAN SEMESELRRLKVQADQWRKAAEAAAAMLSTENNNGGKFVERTGSLDNNVNYTTIAGAMVGSPFSEDMDDESLKKKNGNVLKKIGVLWKKGQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10019912 [exp]	0	1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10026482 [exp]	1.4	0.9402
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	5.7	0.9200
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	6.2	0.9404
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10026471 [exp]	10.6	0.9209
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	19.4	0.9354
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	24.3	0.9341
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	27.2	0.9336
AT3G51325			RING/U-box superfamily protein...		Lus10018292 [exp]	27.3	0.9327
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	28.8	0.9287
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	32.5	0.9244

Compare expression of checked genes

Lus10019912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.