Plant FIBer expression Database

Lus10019913 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43190 186 / 3e-56 ribonuclease P family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026483
[exp]
424 / 7e-150 AT2G43190 180 / 3e-55 ribonuclease P family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G033900
[exp]
264 / 2e-86 AT2G43190 252 / 6e-83 ribonuclease P family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0639 Rof PF01868 UPF0086 Domain of unknown function UPF0086
Representative CDS sequence
>Lus10019913 pacid=23163938 polypeptide=Lus10019913 locus=Lus10019913.g ID=Lus10019913.BGIv1.0 annot-version=v1.0
ATGGACGCATTAGAGAGAAGGTTCGCGGTTGCTAAAGCTGAGGTGCTCCAACAGCAGAAGAGAAGCGAAAAGAGGCCTAGGGTAGAAAGTAAGAAAAGAG
AAGGGAAAGCTCCGGAATCGTCTTCTTCCGGTGCTGCATCAATGTCTACATCCGTTGATGCGCCGACGAGGAAAGGGAATTTCTTTTCCTCAAGCTACTT
CACAGCTCAAGATTTGGAAGGAAGTGGATTGACATATTCAGAAATCTCTCAACCTGTACATGAAAATCTATTAACAACCAACAGTGAGGTTCAGACTAAG
AGAGGGAGTACGGTAGACAAGATTCTACATGATATTTTTCAACGTGGGGATATTTCTCAGAAGTATCTGCAGGGTTCCAGAACGAAAAAACTGGAGAATT
GGATATTACTTGATAATTATGTGCCGGTGCGTGGCAAATCTAAGACTTCTCGCACGGAGGCGTTGCAATTGCAGGCTAAGAGGTCTAAGAAGCATATGTC
TATGAAGCAACATAAAAAGTGTGGATCACTAGAATTGGCAAAACATCTCCGGAAATTTGATGTGTTCAAGCCAATGCATGAGATGTGGAAAGACTACATG
TCAAAGCTTCTAAAAAACACTGGGACAGATCAGTTACCTCAATGTCTTCTTGGCGCAGATCTTCATGGTGCCATTATTATAGTTGCCGACTGTAAGATAT
CATCTTTTACCGGAGTTAGTGGCATCATGATCCGTGAAACTGCAGAGACGTTTGGGATAATTACACGAGATGACAAGTTTAGAGATGAAAGAAGGAAAGA
AAGAAAGTATTATGAGCCAATCAATGGAGAGAAAGATGAGCCAGAATGGAGTCATTGGCATGGGGGGCATGAACTCGAATCAGAGTTCCATTTCACACGA
GAGAATCGTGTAGCTAGCGAAGCTGTCAGTCCCCACACTTGCGATTTTAGCGCAGAATGCAGAGCAGAGAAATTTCATCACCTACTAGGGTTTTTCTTGT
TCCCCTCTTATCTTCCTCCCATTACTCAAAAGCAGAGCAACCAGAAACAAGGGAAAGTGAAAAAAGAACAAGAAGAATCAAATTACCCAGTAATCAAGTG
TTGCTTTGCATATCGACTGTGTAAATCTCCTGGTAAAACCTTCAAACGTTAG
AA sequence
>Lus10019913 pacid=23163938 polypeptide=Lus10019913 locus=Lus10019913.g ID=Lus10019913.BGIv1.0 annot-version=v1.0
MDALERRFAVAKAEVLQQQKRSEKRPRVESKKREGKAPESSSSGAASMSTSVDAPTRKGNFFSSSYFTAQDLEGSGLTYSEISQPVHENLLTTNSEVQTK
RGSTVDKILHDIFQRGDISQKYLQGSRTKKLENWILLDNYVPVRGKSKTSRTEALQLQAKRSKKHMSMKQHKKCGSLELAKHLRKFDVFKPMHEMWKDYM
SKLLKNTGTDQLPQCLLGADLHGAIIIVADCKISSFTGVSGIMIRETAETFGIITRDDKFRDERRKERKYYEPINGEKDEPEWSHWHGGHELESEFHFTR
ENRVASEAVSPHTCDFSAECRAEKFHHLLGFFLFPSYLPPITQKQSNQKQGKVKKEQEESNYPVIKCCFAYRLCKSPGKTFKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G43190 ribonuclease P family protein ... Lus10019913
[exp]
0 1
AT5G66780 unknown protein Lus10026022
[exp]
4.9 0.8355
AT2G24640 UBP19 ubiquitin-specific protease 19... Lus10026918
[exp]
6.4 0.8594
AT5G54280 ATMYOS1, ATM4, ... ARABIDOPSIS THALIANA MYOSIN 1,... Lus10037876
[exp]
10.6 0.8538
Lus10013810
[exp]
12.0 0.8436
AT2G25710 HCS1 holocarboxylase synthase 1 (.1... Lus10025604
[exp]
17.3 0.8339
AT3G16230 Predicted eukaryotic LigT (.1.... Lus10037578
[exp]
18.8 0.8580
AT1G09300 Metallopeptidase M24 family pr... Lus10010905
[exp]
20.4 0.8357
AT4G18465 RNA helicase family protein (.... Lus10025127
[exp]
21.0 0.8527
AT5G43920 transducin family protein / WD... Lus10011916
[exp]
22.4 0.8540
AT2G42500 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2... Lus10013754
[exp]
23.0 0.8130

Lus10019913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.