Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09690 539 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G02970 536 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 127 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 124 / 1e-31 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G22460 122 / 8e-31 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G36290 120 / 6e-30 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 118 / 5e-29 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 117 / 1e-28 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 115 / 6e-28 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 109 / 3e-26 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026484 [exp] 907 / 0 AT5G02970 625 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 128 / 9e-33 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 127 / 4e-32 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 124 / 3e-31 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 124 / 6e-31 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 123 / 7e-31 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 122 / 3e-30 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 120 / 3e-29 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 119 / 4e-29 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131300 [exp] 649 / 0 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 629 / 0 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 125 / 2e-31 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164600 [exp] 124 / 2e-31 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237700 [exp] 124 / 3e-31 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 122 / 2e-30 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 120 / 4e-30 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 114 / 6e-28 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 111 / 9e-27 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 110 / 2e-26 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019914 pacid=23164030 polypeptide=Lus10019914 locus=Lus10019914.g ID=Lus10019914.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTGAGAGGAGGAGCAGACACGTGGCACGAGGAACTAGCGACGCTAGTGGAGGACTCCAGGATACTGTACTCCGGAATGACGTTTGATCCGA ACGTACCGGACTATGTCGGCGCCCAAATGTACAGCGAAGTCGCTGCGACGACTACAGCGGAGACTGAACCGAAGTCGGAGGAAAGTTTGAAGGTGCAGGT CACAGAGTTTGCAAAGGCTTGGGGAGAACTGCTACTGGACTTGGGGAAAGGATGCAAGGACATTGCAGAGCAGAATCTGCTTGATAAGAATTCGTTTGTA GTTCAAAAGATTGTAAAGCCAATTGCAAAGGCATCTGGTCGGCTTGCATTCATGAATGACTACTTTTTGCCTGAGGATCGCAATCCGGTCCACGCCTGGC CAGTTGTGTTCTTCGTTTTCGTACTCGCACTCTCAGCATTGAGAGTAAATTCCCCAGATGAAAGTTCAGTAGCAGTTGTAAAGAAAATGCGTATACATCC TCCTTCTGCAAGACGCATACCATTACCTGACGGTAGACACATAGCTTACCTTGACCGTGGTGTTCCAGCTAACCAAGCGAGATACTCTGTCATTTCTCCG CATTCTTTTCTTTCCTCTCGACTTGGAGGTTTCTCTGGTATTGAGGCATCTCTGCTTGAAGAGTTCGGCATTCGGTTGATAACATATGACCTTCCGGGTT TTGGAGAGAGTGACCCTCATCCTGGCAGAACATTGAACTCATCTGCACAAGATATGCTTCACTTGGCCACTGCTATTGGCCTAGATGACAAATTCTGGGT GTTGGGTTTCTCAAGTGGAAGTATGCACTCTTGGGCTGCCCTAACATATATCCCTGACCGGATCGCAGGTGCTGCCATGTTCGCTCCGATGGTAAACCCA TATGATTCTAGCATGAGCAAGGAAGAGATGTCTAAAACATGGAAAAATTGGCTGTCAAGAAGAAAGTTAATGTATTTCTTGGCACGGAGATTTCCAAGTT TCCTCTCCTTTTTCTATCGTCGCAGTTTCTTATCAGGAAATCATGGTCAGATTGATAAGTGGATGTCTCAACCACTTGGAAGGAAGGATGAAATTCGTGT TAATGAGCCGACATTCGAAGAGTTTTGGCACAGAGACGTCGAGGAGTCGGTACGCCAAGGGAGCGTTAAACCCTTTGTCGAAGAAGCCGTACTACAAGTG TCAAACTGGGGTTTCAATCTGGCCGATCTTCAGGTGCGAAGGGTATGTCCAAAGAAGAGCCTTCTTCTTCGGCTGAGATCCATGTTCAGTGAGGAAGAAT GTGAACTCGCCGGTTTTCTTAGGCCAGTACACATGTGGCAGGGAACGGATGATCAAGTAGTGCCACCGTCGGTTGCCGAGTACATTAGCAGGATTCTACC AGGAGCCACGTTGCATAGGCTACCAAATGAAGGTCACTTCTCTTATTTCTTCTTCTGCAAAGAATGCCACCGGCGAATTTTTTCGACTCTTTTCGGAGAT GCTCTAGGCCCTCTTCCTCTCAACGAGAACGTTGAAGAAGATGCTGTTGCCGTTGACGAATCTTCGTTGGCAGTAGAAAATACTACTGCCACCGGAACTT CTGTTGCTAGCTCTTAG
AA sequence Show only first row Show all	>Lus10019914 pacid=23164030 polypeptide=Lus10019914 locus=Lus10019914.g ID=Lus10019914.BGIv1.0 annot-version=v1.0 MAEVRGGADTWHEELATLVEDSRILYSGMTFDPNVPDYVGAQMYSEVAATTTAETEPKSEESLKVQVTEFAKAWGELLLDLGKGCKDIAEQNLLDKNSFV VQKIVKPIAKASGRLAFMNDYFLPEDRNPVHAWPVVFFVFVLALSALRVNSPDESSVAVVKKMRIHPPSARRIPLPDGRHIAYLDRGVPANQARYSVISP HSFLSSRLGGFSGIEASLLEEFGIRLITYDLPGFGESDPHPGRTLNSSAQDMLHLATAIGLDDKFWVLGFSSGSMHSWAALTYIPDRIAGAAMFAPMVNP YDSSMSKEEMSKTWKNWLSRRKLMYFLARRFPSFLSFFYRRSFLSGNHGQIDKWMSQPLGRKDEIRVNEPTFEEFWHRDVEESVRQGSVKPFVEEAVLQV SNWGFNLADLQVRRVCPKKSLLLRLRSMFSEEECELAGFLRPVHMWQGTDDQVVPPSVAEYISRILPGATLHRLPNEGHFSYFFFCKECHRRIFSTLFGD ALGPLPLNENVEEDAVAVDESSLAVENTTATGTSVASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10019914 [exp]	0	1
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	5.0	0.9011
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	6.4	0.7837
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	14.9	0.8452
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	17.0	0.8173
AT5G62960			unknown protein		Lus10014556 [exp]	20.8	0.7789
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	21.5	0.7704
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	21.5	0.8303
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10003934 [exp]	23.5	0.8169
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	29.7	0.8423
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	31.0	0.7943

Compare expression of checked genes

Lus10019914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.