Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09080 299 / 5e-93 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 298 / 2e-92 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 295 / 5e-92 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 257 / 3e-77 HSP70B heat shock protein 70B (.1) AT3G12580 248 / 9e-74 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 244 / 1e-72 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 241 / 3e-71 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 237 / 6e-71 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 238 / 3e-70 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT4G37910 217 / 4e-62 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019911 [exp] 319 / 3e-106 AT5G28540 250 / 1e-79 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 328 / 9e-105 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 322 / 6e-102 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 320 / 2e-101 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10028061 [exp] 318 / 1e-100 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007777 [exp] 303 / 2e-99 AT5G28540 358 / 8e-121 heat shock protein 70 (Hsp 70) family protein (.1) Lus10026480 [exp] 295 / 6e-97 AT1G09080 234 / 2e-73 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017022 [exp] 298 / 2e-92 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10021345 [exp] 293 / 6e-92 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 306 / 8e-96 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.012G017600 [exp] 297 / 3e-92 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 296 / 7e-92 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 295 / 1e-91 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042600 [exp] 256 / 8e-77 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 254 / 6e-76 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 251 / 4e-75 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 247 / 2e-73 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 246 / 4e-73 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 245 / 7e-73 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10019915 pacid=23163942 polypeptide=Lus10019915 locus=Lus10019915.g ID=Lus10019915.BGIv1.0 annot-version=v1.0 ATGTTGAAAGTGAAAGCAGAGAAAATCGAAGAAGAAGATGTGAAGCCGGCGATAAGCAAAGCCGGCGGAGGAGATGTTGTGATCGGGATTGATCTCGGCA CAACTTTCTCTTGCGTCGCCGTCGCAATCAACGGCAACGTGGAAATCATAGCCAACGATCAAGGCAACCGCACCACTCCTTCCTCCGTTGGCTTCTCCTC ATTCAATTCCGATAGTCTCATCGGCGAGGCAGCCAAAAATCAGGCCACTTTCAACCCCCGCCGCACTGTCTTCGATGTCAACCCGATGGTTCAACAAGAC ATAAAATATTTGCCTTATACGGTGGTCAACAGAGATGGAAAGGCTTACGTGGAATTGGAGGTCAAAATTGGAGAAAAAGTCAAAGCATTCAGTCCGGAAG AAATCAGCGCCATGGTATTGGGGAAGATGAAGGAAACCACCGAATCTTATATCGGAAAGCCGGTACACCGAGTCGTAGTGACAGTGCCGGCTTACTTCAA CGACCCACAGAGGGAAGCCACCAAGAACGCCGGCACAATCGGCGGCCTCGGCGTCCTCCGTATAATCAACGAGCCTACTGCTGCCGCCCTAGCCTACGGA TTCCATAATCAAAAGAATCCTCTGAAGAGAAAGAGGAAAAGGAACACCAAGAGTAAGATTCTGGTGTATGATCTGGGCGGTGGTACGTTCGATGTCAGCG TGCTGCAAGTCCACGGTCGAGAATTCCGAGTACTAGCCGTCGGCGGCGATACGCATCTCGGTGGGGGAGATTTCGATCGGCGGGTGATAGAATATTTCAT CGGTTTGATTAAAAGGAAGTACAACGGCAAGGATATTAGTGGGGACTGCTGGGCTCTAGCGAGGCTTCGAAAGGTTGTTCCTGCAAAGATGTCACAAAAT TACGGCACGTTGGTAGACCAGCAAACCGATATGAATATCATGGTGGTTCAAGGTGAAAGGCCACTGACGAAGGATTGTACCGAGCTTGGAAAGTTTGTTT TGTCCGATATCAAGCCAGCTCCTAGCTTAAGAAAGAAGACTCTCTGCATAATCAAAATCATTGACTACAAGGGGTATTTGACGCATGCAGAGATTGAAAG GATGACAAGAGAAGCAAAGATGATGAAGGAGGAAGACGAGATAGCCAAGGCGCGAGTAGAGGCCATGAATGCCTTGGAAAAGTACATCTACGATGTGAAG AAAGCCATTAGGACTTCTGCAATTGGAAACATGATGAGTTATGATGACAAAACATTGGTAGAGAGTGCAATTGAAGAAGCTTCACTGTGGTTGGACTTAA ACAAAAACGCTACTAAAGAAGTTTATGAGGAGAAGATGAAGAAGCTCGCAGATGTTTGGAATTCTATCATCACCAAACCAACGCATAATTCCCATTCCGT TTCGGAACAGGCTACACCTTTCATAGCAGGATGCGCAGTGGCCGGAGCTGCTTATGCCGCGAGATTCACGATCCAGGCCTTCCAAGCTCTGAAGACGGCA CCGCGTGCATTCTACAAAGGGGGGTTTCAACCTACCATGACCAAAAGAGAAGCCGCCCTTATACTCGGAGTAAGGGAAAGGACTCCAGCAAAAGATGTGA AGGACGCTTACAAGAGAATCATGAAGGTCAACCATCCTGATCAAGGCGGTAGTCACTACATATCAAACAAAGTCAACGAAGCTAAGAACATCTTGCTTGG TGGGCAACATTCCACCTCTTCTGCTTTTTAG
AA sequence Show only first row Show all	>Lus10019915 pacid=23163942 polypeptide=Lus10019915 locus=Lus10019915.g ID=Lus10019915.BGIv1.0 annot-version=v1.0 MLKVKAEKIEEEDVKPAISKAGGGDVVIGIDLGTTFSCVAVAINGNVEIIANDQGNRTTPSSVGFSSFNSDSLIGEAAKNQATFNPRRTVFDVNPMVQQD IKYLPYTVVNRDGKAYVELEVKIGEKVKAFSPEEISAMVLGKMKETTESYIGKPVHRVVVTVPAYFNDPQREATKNAGTIGGLGVLRIINEPTAAALAYG FHNQKNPLKRKRKRNTKSKILVYDLGGGTFDVSVLQVHGREFRVLAVGGDTHLGGGDFDRRVIEYFIGLIKRKYNGKDISGDCWALARLRKVVPAKMSQN YGTLVDQQTDMNIMVVQGERPLTKDCTELGKFVLSDIKPAPSLRKKTLCIIKIIDYKGYLTHAEIERMTREAKMMKEEDEIAKARVEAMNALEKYIYDVK KAIRTSAIGNMMSYDDKTLVESAIEEASLWLDLNKNATKEVYEEKMKKLADVWNSIITKPTHNSHSVSEQATPFIAGCAVAGAAYAARFTIQAFQALKTA PRAFYKGGFQPTMTKREAALILGVRERTPAKDVKDAYKRIMKVNHPDQGGSHYISNKVNEAKNILLGGQHSTSSAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	0	1
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	2.8	0.9720
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	3.3	0.9726
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	6.7	0.9691
AT3G58880			F-box/RNI-like superfamily pro...		Lus10035669 [exp]	7.1	0.9410
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	7.7	0.9465
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	9.2	0.9679
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	10.2	0.9544
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	10.4	0.9276
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	12.3	0.9541
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	13.6	0.9187

Compare expression of checked genes

Lus10019915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.