Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 346 / 2e-115 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 262 / 7e-83 IQD1 IQ-domain 1 (.1.2) AT3G52290 234 / 1e-72 IQD3 IQ-domain 3 (.1) AT2G26410 140 / 1e-36 IQD4 IQ-domain 4 (.1) AT2G33990 99 / 2e-23 IQD9 IQ-domain 9 (.1) AT2G26180 91 / 8e-20 IQD6 IQ-domain 6 (.1) AT3G15050 88 / 1e-19 IQD10 IQ-domain 10 (.1) AT3G22190 88 / 8e-19 IQD5 IQ-domain 5 (.1.2) AT3G59690 87 / 2e-18 IQD13 IQ-domain 13 (.1) AT2G43680 85 / 2e-17 IQD14 IQ-domain 14 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026486 [exp] 714 / 0 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 318 / 6e-107 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 276 / 7e-89 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 275 / 5e-87 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10015068 [exp] 165 / 2e-48 AT5G03040 202 / 4e-63 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 95 / 7e-21 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10027059 [exp] 95 / 1e-20 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10025593 [exp] 92 / 9e-20 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10013522 [exp] 89 / 8e-19 AT2G26180 403 / 2e-138 IQ-domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086300 [exp] 418 / 2e-143 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 417 / 3e-143 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 311 / 1e-101 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 111 / 2e-26 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G215200 [exp] 102 / 1e-23 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.018G062001 [exp] 91 / 1e-20 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.019G095700 [exp] 94 / 2e-20 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.011G096500 [exp] 91 / 4e-20 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.001G375700 [exp] 91 / 4e-20 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.013G127200 [exp] 92 / 5e-20 AT3G59690 447 / 5e-153 IQ-domain 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10019916 pacid=23164027 polypeptide=Lus10019916 locus=Lus10019916.g ID=Lus10019916.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAAGGGAAGTGGTTCTCCAGTGTGAAGAAAGCTCTCAGCCCTTCTTCAAAGGAAAAGAAACACCAGAATCCGGAAGCCGGTTTGACTCCTC CAGTTGAAGATGTAGTGGCAACACCATCACTTCCTCCTCCACAGCCTGAGGAGATTACAGTATTAGAGACCAGTAATGAAAGTAATACTAATGTTGAGGC TCCTGAGCCTATTGTTGAGACAACAGTGGAAGTTGTTAGAGCGGCGAAACCTAACAAATTCGCTGGGAAATCGGAGGAGGAAGCTGCAGCGATCAGGATT CAAACTGCATTCAGGGGCTATCTGGCTAGGAGGGGATTGAGGGCTTTAAGAGGATTGGTTAGGCTGAAGCAACTGATGGAAGGTCCTACTGTGAAGAGAC AAGCTGTTCAAACGCTCCGCTGCATGCAAACTCTATCTCGTGTCCAAACTCAAATCCATACCAGGAGAGTCAGAATGTCCGAAGAAAACCAAGCCCTTCA GAGACAACTCTTGCAAAAACACGCCAAGGAGCTAGAGAGCTTACGGATGAAAGGACAATGGGACGATAGCTTGCAGTCGAAGGAAAAGATCGAGAGCAAC TTACTAAGCAAGTATGAGGCAACAATGAGAAGGGAAAGAGCACTAGCTTATGCATTTTCCCATCAGCAAAGCTTGAAGAATCCTTCAAGATCAAACACAA CTATGTTCATGACTCCTGGCAATCCCTCCTGGGGATGGAGCTGGCTCGAGCGATGGATGTCGGCTCATCCAGACAAAGAAGTCAACAATGACCAAGCTTC TGTAAAGAGTGGAAGCCGCAGTTTGGTTGGCGGAGAAATCAGCAGAGCTTACGCCCGTTACCAGCTCAACTCAGATAAACTTTTCTCGCCAGGAGATAAT CAAGCCGACACGATAAGCATACATTCCCCTTCAGCGAAATCCAAGCCAGCACCTTCAAGAAAACTCAAGCCAGCAAGTCCCAGGAGCAGCATTGGAGTCC CAGACGATGACACAAGAAGCATGGTTAGTATGCAGTCACATAGAAGGCACAGCATTGCAGGATCATCCGTAGGTGGTGACGATGAAAGCTCTCTTCCGAG CTACATGGTACCGACACAGTCTGCAAAAGCTAAGTCAAGGCTGCAGAGTCCATTAGGAATAGGTGCGGTATCAGAGGATAATGTGGCTAATGCACCATTT GCATCTGCAAAGAAGAAGCTTTCTTATCCATCATCAGCCAAGCCGAGGCGGCATTCGGGTCCTCCTAAGGTGGATTCCAGCTTGATCAAGGCTGTGAATG GTGTGGTGAGAAATGGAGAAGTCGGTTAA
AA sequence Show only first row Show all	>Lus10019916 pacid=23164027 polypeptide=Lus10019916 locus=Lus10019916.g ID=Lus10019916.BGIv1.0 annot-version=v1.0 MGRKGKWFSSVKKALSPSSKEKKHQNPEAGLTPPVEDVVATPSLPPPQPEEITVLETSNESNTNVEAPEPIVETTVEVVRAAKPNKFAGKSEEEAAAIRI QTAFRGYLARRGLRALRGLVRLKQLMEGPTVKRQAVQTLRCMQTLSRVQTQIHTRRVRMSEENQALQRQLLQKHAKELESLRMKGQWDDSLQSKEKIESN LLSKYEATMRRERALAYAFSHQQSLKNPSRSNTTMFMTPGNPSWGWSWLERWMSAHPDKEVNNDQASVKSGSRSLVGGEISRAYARYQLNSDKLFSPGDN QADTISIHSPSAKSKPAPSRKLKPASPRSSIGVPDDDTRSMVSMQSHRRHSIAGSSVGGDDESSLPSYMVPTQSAKAKSRLQSPLGIGAVSEDNVANAPF ASAKKKLSYPSSAKPRRHSGPPKVDSSLIKAVNGVVRNGEVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	0	1
AT5G47900			Protein of unknown function (D...		Lus10027468 [exp]	1.0	0.8401
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10014409 [exp]	2.0	0.8370
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017652 [exp]	7.3	0.7931
AT1G20540			Transducin/WD40 repeat-like su...		Lus10034576 [exp]	8.3	0.7631
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	8.8	0.8150
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	8.9	0.8222
AT5G38700			unknown protein		Lus10025041 [exp]	10.4	0.7586
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	11.4	0.7883
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10015676 [exp]	11.7	0.7734
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	12.2	0.7809

Compare expression of checked genes

Lus10019916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.