Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37090 397 / 6e-138 IRX9 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G27600 214 / 4e-66 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT5G67230 85 / 7e-18 IRX14-L, I14H IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G36890 80 / 3e-16 IRX14 irregular xylem 14, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026487 [exp] 645 / 0 AT2G37090 409 / 8e-143 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10015069 [exp] 245 / 4e-79 AT2G37090 236 / 9e-76 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10007692 [exp] 206 / 1e-62 AT1G27600 498 / 2e-176 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10032817 [exp] 206 / 2e-62 AT1G27600 484 / 3e-171 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10010268 [exp] 69 / 2e-12 AT5G67230 634 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041601 [exp] 68 / 3e-12 AT5G67230 632 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10011500 [exp] 60 / 7e-10 AT5G67230 379 / 6e-130 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10019325 [exp] 60 / 1e-09 AT5G67230 335 / 5e-127 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086400 [exp] 437 / 7e-154 AT2G37090 473 / 4e-168 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G131000 [exp] 429 / 7e-151 AT2G37090 439 / 7e-155 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G240200 [exp] 240 / 1e-75 AT1G27600 374 / 2e-127 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.002G107300 [exp] 209 / 5e-64 AT1G27600 477 / 1e-168 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.007G047500 [exp] 68 / 2e-12 AT5G67230 543 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G141500 [exp] 64 / 5e-11 AT5G67230 563 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03360 [flax] [poplar] Glyco_transf_43 Glycosyltransferase family 43
Representative CDS sequence Show only first row Show all	>Lus10019917 pacid=23164052 polypeptide=Lus10019917 locus=Lus10019917.g ID=Lus10019917.BGIv1.0 annot-version=v1.0 ATGGGTTCTTTAGAAAGACCGAGGAAGAAAGTCCAGATATGGAAAAAAGCAGTAGTCCATTTCGCCCTCTGCTTCGTCATCGGCTTCTTCAGCGGCTTTG CCCCTACAAGTAAATCCTCCATGTTCTCCTCCACAACAACAACAACATCTCGTTCAGTCATTTCATCAAACACCTCGCATGCGCCACCACAAATCGCATC CCTCCATTCAACTTCCAGAAAAATCAACATAACCAGAAGCACCATCTCCGAACCTCCCGCCTCAACTACTCCGGAAGCTGGAGAACAGTCATCCAAAACG GAGGAGGAGTTCACGGGGACGGCGGAGTTCGTTCCGGATCTGAAACTGACCTCAAGGAGGCTGATCATCATCATAACTCCGACCAACGCCAGGGATCCGT ACCAGGGCGTGCAACTGAGGCGGCTGGCGAACACGCTGAGGCTGGTGGCGGCGCCGCTGCTGTGGGTGGTGGTGGAGCAGAAGCAGTCGGCGGAGACGAA CGAGCTGTCGGAGATGCTGAGGAAGACCGGGATGATGTACAGGCATTTGGTGTACAAGGAGAATATCACGGACCCGGAGGTTGAGCTAGAGCATCAGAGG AATGTTGCGTTAAAGCATGTTGAGCATCACAGGCTGAGCGGGATCGTGCATTTCGCCGGGATTCACAATGTCTACGACCTCGACTTCTTCGACGACCTCA GGGAAATTGAGATGTTTGGGACATGGCCGATGGCATCACTGTCTCCGTACAAGAGCGAGGTAGTAATCGAAGGACCAATCTGCGACTCATCCCAGGTTAT TGGGTGGCACCTCAAGAAGATGAATGGGCAGACCGACAACGATACCGAAATCGCGAGACCTCCCATTCATGTTTCGAGCTTCGCCTTCAATAGCTCCATC CTTTGGGACCCTGAGCGATGGGGACGTCCTTCATATTCGGAGCACACTTCACAAAACTCGATAAAGTTCGTGAAAGAAGTAGCCCTAGACGATGAGACAA AATTAAAGGGGATTCCACCGTCAAAGTGCTCTAAAATTATGATGTGGCGGCTTCGTTTCCCGACTAAAAAAATAGTACCTTCTTTGGATATCCTCTCATC CTCATGA
AA sequence Show only first row Show all	>Lus10019917 pacid=23164052 polypeptide=Lus10019917 locus=Lus10019917.g ID=Lus10019917.BGIv1.0 annot-version=v1.0 MGSLERPRKKVQIWKKAVVHFALCFVIGFFSGFAPTSKSSMFSSTTTTTSRSVISSNTSHAPPQIASLHSTSRKINITRSTISEPPASTTPEAGEQSSKT EEEFTGTAEFVPDLKLTSRRLIIIITPTNARDPYQGVQLRRLANTLRLVAAPLLWVVVEQKQSAETNELSEMLRKTGMMYRHLVYKENITDPEVELEHQR NVALKHVEHHRLSGIVHFAGIHNVYDLDFFDDLREIEMFGTWPMASLSPYKSEVVIEGPICDSSQVIGWHLKKMNGQTDNDTEIARPPIHVSSFAFNSSI LWDPERWGRPSYSEHTSQNSIKFVKEVALDDETKLKGIPPSKCSKIMMWRLRFPTKKIVPSLDILSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	0	1
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	1.0	0.9956
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	2.4	0.9854
AT2G28315			Nucleotide/sugar transporter f...		Lus10041315 [exp]	2.4	0.9937
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	3.0	0.9912
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	3.9	0.9891
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	4.2	0.9720
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	4.5	0.9898
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	4.6	0.9833
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	6.9	0.9821
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	7.4	0.9785

Compare expression of checked genes

Lus10019917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.