Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60390 874 / 0 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 874 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 874 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 874 / 0 GTP binding Elongation factor Tu family protein (.1) AT1G18070 290 / 1e-92 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 285 / 2e-89 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G35550 176 / 4e-54 elongation factor Tu C-terminal domain-containing protein (.1) AT4G02930 163 / 3e-45 GTP binding Elongation factor Tu family protein (.1) AT4G20360 163 / 4e-45 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT2G31060 71 / 1e-12 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040378 [exp] 881 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 881 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023174 [exp] 875 / 0 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 805 / 0 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10015070 [exp] 692 / 0 AT1G07930 684 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10020153 [exp] 308 / 8e-98 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 307 / 2e-93 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041996 [exp] 288 / 4e-92 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 287 / 4e-91 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130900 [exp] 883 / 0 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 877 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 877 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 877 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 872 / 0 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 871 / 0 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 871 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 871 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.016G086500 [exp] 487 / 6e-174 AT5G60390 479 / 5e-171 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.018G006500 [exp] 296 / 9e-94 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019918 pacid=23163973 polypeptide=Lus10019918 locus=Lus10019918.g ID=Lus10019918.BGIv1.0 annot-version=v1.0 ATGGGTAAAGAAAAGGTTCATATCAACATTGTGGTCATTGGACATGTCGACTCTGGCAAGTCCACCACCACTGGTCACTTGATCTACAAGCTAGGAGGTA TTGACAAGCGTGTCATTGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTACGCATGGGTGTTGGACAAGCTCAAGGCTGAGCG TGAGCGTGGTATCACCATTGATATTGCTCTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTCATCGATGCCCCTGGACATCGTGATTTCATCAAG AACATGATTACTGGTACTTCACAGGCTGACTGTGCCATCCTGATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGACAGACAC GTGAGCATGCTCTTCTGGCTTTCACCCTTGGTGTGAAGCAGATGATCTGCTGCTGTAACAAGATGGATGCGACCACTCCCAAGTACTCAAAGTCCAGGTT CGATGAAATCGTCAAGGAAGTTTCATCCTACTTGAAGAAGGTTGGATACAACCCCGACAAAATCCCATTCGTTCCAATCTCTGGTTTCGAGGGTGACAAC ATGATTGAGAGGTCAACCAACCTTGACTGGTACAAGGGCCCAACCCTTCTTGAGGCTCTTGACCAGATCAACGAGCCCAAGAGGCCCTCAGACAAGCCCC TCCGTCTGCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTGCCAGTGGGACGTGTGGAGACTGGAGTCCTCAAGCCTGGTATGGTTGTCAC CTTCGGCCCTACTGGTCTGACCACTGAAGTCAAGTCCGTCGAGATGCACCACGAAGCTCTGCAGGAGGCTCTTCCAGGTGACAACGTTGGTTTCAATGTT AAGAATGTTGCTGTCAAGGATATCAAGCGTGGCTACGTTGCATCCAACTCCAAGGACGACCCAGCCAGGGAAGCTGCCAACTTCACATCTCAGGTCATCA TCATGAACCACCCTGGTCAGATTGGAAACGGATATGCTCCAGTGCTGGATTGCCACACCTCCCACATTGCTGTGAAGTTCTCTGAGATCCTCACCAAGAT TGACAGGCGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAGTTTTTGAAGAATGGTGATGCAGGTATGGTGAAGATGATCCCGACCAAGCCCATGGTGGTG GAGACTTTCTCCCAGTACCCTCCTCTTGGACGTTTTGCCGTTAGGGACATGAGACAGACTGTTGCTGTGGGAGTCATCAAGAGCGTGGAGAAGAAGGACC CATCTGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10019918 pacid=23163973 polypeptide=Lus10019918 locus=Lus10019918.g ID=Lus10019918.BGIv1.0 annot-version=v1.0 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIK NMITGTSQADCAILIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDN MIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNV KNVAVKDIKRGYVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVV ETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07920			GTP binding Elongation factor ...		Lus10019918 [exp]	0	1
AT1G07920			GTP binding Elongation factor ...		Lus10026488 [exp]	1.0	0.8968
AT1G07210			Ribosomal protein S18 (.1)		Lus10038756 [exp]	4.5	0.8333
AT4G26810			SWIB/MDM2 domain superfamily p...		Lus10038799 [exp]	7.7	0.8149
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	8.0	0.7763
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017570 [exp]	11.7	0.8314
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033947 [exp]	16.0	0.7163
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	16.7	0.7743
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10002338 [exp]	20.2	0.8041
AT1G07930			GTP binding Elongation factor ...		Lus10015070 [exp]	20.6	0.7919
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	20.7	0.7768

Compare expression of checked genes

Lus10019918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.