Plant FIBer expression Database

Lus10019919 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03080 213 / 2e-70 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026489
[exp]
310 / 7e-109 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G130700
[exp]
242 / 5e-82 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Potri.016G086700
[exp]
218 / 2e-72 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10019919 pacid=23163995 polypeptide=Lus10019919 locus=Lus10019919.g ID=Lus10019919.BGIv1.0 annot-version=v1.0
ATGCCGCCATTGAAGGCCGTTACCCTCACCCACGTCCGTTACCAGAGAGGCGACCAATTAGGCCATTTCCTCGCCTGGATCTCACTCGTCCCGGTCTTCA
TCAGCTTCGGCGGATTCGTCTCCCATTTCATCTTCCGCCGCGAGCTCCAGGCCATGTTCTTCGCCCTAGGCCTCCTCATCTCCCAATTCGTCAACGAAGT
CGTCAAGAACACCTTCCAGCAGGCCCGCCCCATCACCTGCGAGCTCCTTGAGATGTGCGATTCCCACGGCTGGCCCTCCAGCCCCTCCCCGTACCTGTTC
TTCTTCTCCACCTATCTCACCATGCTCCTGGTCAACAGGGCTACATTGGGGCTTTTCCTCGGCGGGGTGTGGTTCTGGGTGGTGAACTCGGTGCTTATCG
TCTACTTTCCGGCGATCGAGGAGAGTCGATTAGGGAGGATGTTCTATGTGAAGGATACCTCCCATATACGCAATGTGTTGCAGTTCGAGTATGATAATGC
CAGAGCTGCTAGGACGAATATGGCTGCAAGGAAGGTTATGGATCCCAAGACAGTCTGA
AA sequence
>Lus10019919 pacid=23163995 polypeptide=Lus10019919 locus=Lus10019919.g ID=Lus10019919.BGIv1.0 annot-version=v1.0
MPPLKAVTLTHVRYQRGDQLGHFLAWISLVPVFISFGGFVSHFIFRRELQAMFFALGLLISQFVNEVVKNTFQQARPITCELLEMCDSHGWPSSPSPYLF
FFSTYLTMLLVNRATLGLFLGGVWFWVVNSVLIVYFPAIEESRLGRMFYVKDTSHIRNVLQFEYDNARAARTNMAARKVMDPKTV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G03080 Phosphatidic acid phosphatase ... Lus10019919
[exp]
0 1
AT5G03080 Phosphatidic acid phosphatase ... Lus10026489
[exp]
1.4 0.9612
AT3G52760 Integral membrane Yip1 family ... Lus10017054
[exp]
1.4 0.9619
AT1G74670 GASA6 GA-stimulated Arabidopsis 6, G... Lus10018016
[exp]
3.5 0.9245
AT1G75390 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) Lus10040428
[exp]
4.0 0.9343
AT5G12890 UDP-Glycosyltransferase superf... Lus10031248
[exp]
4.2 0.9408
AT2G36300 Integral membrane Yip1 family ... Lus10021374
[exp]
6.0 0.9299
AT2G25680 MOT1 molybdate transporter 1 (.1) Lus10016331
[exp]
7.3 0.9312
AT3G14240 Subtilase family protein (.1) Lus10013187
[exp]
8.7 0.9219
AT1G79550 PGK phosphoglycerate kinase (.1.2) Lus10031743
[exp]
9.2 0.9202
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10014234
[exp]
9.5 0.9325

Lus10019919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.