Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03110 52 / 9e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026490 [exp] 261 / 4e-88 AT5G03110 61 / 6e-11 unknown protein Lus10017938 [exp] 45 / 5e-05 AT3G15095 169 / 4e-44 high chlorophyll fluorescence 243, unknown protein Lus10013679 [exp] 44 / 6e-05 AT3G15095 130 / 2e-32 high chlorophyll fluorescence 243, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130500 [exp] 99 / 2e-24 AT5G03110 145 / 2e-41 unknown protein Potri.016G086900 [exp] 79 / 6e-17 AT5G03110 120 / 8e-32 unknown protein Potri.011G097700 [exp] 47 / 8e-06 AT3G15095 157 / 4e-40 high chlorophyll fluorescence 243, unknown protein Potri.001G373100 [exp] 45 / 2e-05 AT3G15095 155 / 2e-39 high chlorophyll fluorescence 243, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019920 pacid=23164045 polypeptide=Lus10019920 locus=Lus10019920.g ID=Lus10019920.BGIv1.0 annot-version=v1.0 ATGTCGGCAGCAAGAGCCGCGGCCGCTCCCGCTCCAGCCCTATGTTCGTCCGCAGCAAGAAGAACACCACCGCGGCCATCGAAGCTCCCGAGCCTTCTTC TCCTAAAGTCACCTGCATGGGTCAGGTCCGGGTCAGGCGTAGTGCCAACAAGAAGAAGAAGAAACGACGGACCTCCGCCGATTGTAACCGTTGCTGGCGC CGCCGAAGCGCCGACTTTATCCGCTACGAGGAAGGTGTTTGCCTACTCGTCACCGTCGAACTCGCCGCCGAAGAACGCGCTGCTGTTGATTCGGAGCAGA TCTGCGCCGTACAGAACATCGTCACTGGCGAGTAGGTTTTGGGGTTCGCCGGTGGGAAACGAAGAGACGGAGCAAAAGCAGAGCACGGAGCAAGAGGAGG AGGAGGAGGAATCGACGACAAGCCTGGCGACATCGAAGCGGGAATCGTCGTCCTGCGAAGAATCGGAGAAGGAATCGAGGTTGTATCCGGAAACCGAAGA GATAAATAAATTAGGGGTCTGGAAATCAGATTTCGAGGGAGGCAACTCAGTCGAGTTAATTGAAGAAAGAATCAAAGCAGTGGAGGATCCAGAAGTTGTT AATGATGATGAATTGGAAATGGAAGCGGTGGTAGGGCAGCGGCCGGTAATGTTGACGAGGTGTAAATCAGAGCCGGCGAGAATCGGCGGTGAGAAGTTCG ATGCGGAGGTGAGCTTCTGGAAGAAGAGAAGGTTGGGGTTCACGTAA
AA sequence Show only first row Show all	>Lus10019920 pacid=23164045 polypeptide=Lus10019920 locus=Lus10019920.g ID=Lus10019920.BGIv1.0 annot-version=v1.0 MSAARAAAAPAPALCSSAARRTPPRPSKLPSLLLLKSPAWVRSGSGVVPTRRRRNDGPPPIVTVAGAAEAPTLSATRKVFAYSSPSNSPPKNALLLIRSR SAPYRTSSLASRFWGSPVGNEETEQKQSTEQEEEEEESTTSLATSKRESSSCEESEKESRLYPETEEINKLGVWKSDFEGGNSVELIEERIKAVEDPEVV NDDELEMEAVVGQRPVMLTRCKSEPARIGGEKFDAEVSFWKKRRLGFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03110			unknown protein		Lus10019920 [exp]	0	1
AT5G03110			unknown protein		Lus10026490 [exp]	1.4	0.9399
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	2.0	0.9155
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	4.9	0.9134
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Lus10009812 [exp]	6.3	0.9023
					Lus10020006 [exp]	6.7	0.9118
AT1G02816			Protein of unknown function, D...		Lus10009854 [exp]	6.9	0.9049
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	8.5	0.9026
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	8.9	0.8975
AT4G22560			unknown protein		Lus10028927 [exp]	9.2	0.9133
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	9.2	0.8960

Compare expression of checked genes

Lus10019920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.