Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37110 278 / 1e-94 PLAC8 family protein (.1) AT2G40935 64 / 4e-12 PLAC8 family protein (.1.2.3) AT3G18450 53 / 3e-08 PLAC8 family protein (.1) AT1G68630 49 / 6e-07 PLAC8 family protein (.1) AT3G18460 45 / 1e-05 PLAC8 family protein (.1) AT3G18470 40 / 0.0004 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026492 [exp] 413 / 1e-147 AT2G37110 290 / 3e-99 PLAC8 family protein (.1) Lus10023176 [exp] 340 / 2e-118 AT2G37110 299 / 7e-103 PLAC8 family protein (.1) Lus10015072 [exp] 338 / 3e-118 AT2G37110 306 / 4e-106 PLAC8 family protein (.1) Lus10005257 [exp] 63 / 9e-12 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10034298 [exp] 42 / 0.0002 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 41 / 0.0003 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130300 [exp] 306 / 1e-105 AT2G37110 320 / 1e-111 PLAC8 family protein (.1) Potri.016G087200 [exp] 295 / 5e-101 AT2G37110 309 / 4e-107 PLAC8 family protein (.1) Potri.006G024900 [exp] 63 / 9e-12 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10019922 pacid=23163999 polypeptide=Lus10019922 locus=Lus10019922.g ID=Lus10019922.BGIv1.0 annot-version=v1.0 ATGGCTAACAACAACACCTCCGCCAATGCCCACGCCTCCTCCAACGAAGATAGCCAGGAATCCAGCCCTCTCTTGAACAAGACCGTCCATGAAGAAGAAC ATTTGACAACCAAGGCCGACAGCAAGACCGCACCAGCTCCTTGTCTGGCGAAATCGGCCCAGGAATGCACTGCTGCGCACCATGGATGGACGGCTAACGG ATTGCCACTTGGACACGGAAGCGTGGTCGGAGAGCCCATGGGCCGCTCTCAATGGGATTCAGGGATCTGTGATTGCCTTGGCAGCAACGACGATTTCTGC AGCAGCGATCTTGAAGTCTGTCTGCTTGGCAGTGTTGCTCCTTGTGTGTTGTATGGAACCAATGCCGAGCGACTGGGATCCACCCCTGGAACATTTGCAA ACCATTGCTTGCCTTACACTGGCCTCTACTTCCTTGGCAATTCTGTGTTTGGCTGGAACTGCCTTGCTCCATGGTTTTCATACACCAGCCGCACTGCTAT GCGTCGCAGTTCTGATGACAAAGCTGTCTTTGTTGTTTTGTGTTGGAAACAGGGAAGCTGCGAGGCACTGGATCGGTCATGTGGATGCTGCGGTGGGAGC TGCATCGAAGAGGAGTTCCAACGCGAGCAATGTGAAACAGCATGTGATTTTGCTACTCATGTGTTCTGCCACCCGTGTGCCCTTTGCCAGGAAGGCCGTG AGATCCGACGCAGAGTGCCTCATCCGGGCTTTAAGCCTCAGCCGATGCTAGTCATGCTCCCTCCCGGAGGCCAGGCTATGGGTCGCGAGGCTTGA
AA sequence Show only first row Show all	>Lus10019922 pacid=23163999 polypeptide=Lus10019922 locus=Lus10019922.g ID=Lus10019922.BGIv1.0 annot-version=v1.0 MANNNTSANAHASSNEDSQESSPLLNKTVHEEEHLTTKADSKTAPAPCLAKSAQECTAAHHGWTANGLPLGHGSVVGEPMGRSQWDSGICDCLGSNDDFC SSDLEVCLLGSVAPCVLYGTNAERLGSTPGTFANHCLPYTGLYFLGNSVFGWNCLAPWFSYTSRTAMRRSSDDKAVFVVLCWKQGSCEALDRSCGCCGGS CIEEEFQREQCETACDFATHVFCHPCALCQEGREIRRRVPHPGFKPQPMLVMLPPGGQAMGREA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	0	1
AT4G22580			Exostosin family protein (.1)		Lus10028924 [exp]	2.0	0.9334
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	2.6	0.9425
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	4.2	0.9232
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	4.5	0.9201
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	4.6	0.9129
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	5.3	0.9232
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	6.9	0.9030
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	6.9	0.9169
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	7.9	0.9068
AT3G08780			unknown protein		Lus10014237 [exp]	9.2	0.9027

Compare expression of checked genes

Lus10019922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.