Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53380 910 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 818 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 585 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 406 / 8e-132 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 369 / 2e-117 RLK receptor lectin kinase (.1) AT3G53810 365 / 3e-116 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 361 / 2e-114 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 350 / 2e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 349 / 7e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 348 / 2e-109 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026493 [exp] 1199 / 0 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 575 / 0 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 421 / 3e-137 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 416 / 4e-135 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 391 / 9e-126 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 390 / 1e-125 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 386 / 4e-124 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 385 / 2e-123 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 385 / 9e-123 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087800 [exp] 1014 / 0 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 1006 / 0 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 593 / 0 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 590 / 0 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 404 / 3e-131 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.005G189500 [exp] 402 / 3e-130 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 393 / 9e-127 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 387 / 1e-124 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 384 / 1e-123 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.009G036300 [exp] 382 / 1e-122 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10019923 pacid=23164089 polypeptide=Lus10019923 locus=Lus10019923.g ID=Lus10019923.BGIv1.0 annot-version=v1.0 ATGTTGCCTTCTCCTCCCCTTATTGCACTCTCCGTCTTCCTACTCTGTTCTTTGACCTCCGCCGCCACCGAATTTGACTTCGGGACGCTAACTCTCAGTA GCCTCAAGCTAATCGGCGACGCTCACTTGAACAATGGCAGCGTCCGCCTCACTCGCGATCTCGCCGTCCCTAATTCCGGCTCCGGGAGAGCTCTCTATTC CAAGCCGATTCGGTTCCGAAATCCCGGGACTCGCTCAATCACAAGCTTCTCCACCTTCTTCTCCTTCACCGTCACCGACTTAAACCCCTCCTCGATCGGC GGCGGCCTCGCCTTTCTGATTTCTCCCATCCCCGACGCGATTGGAGCCGCCGGAGGATGTCTGGGCCTCTTCAGCGCCGATGGACTTGCTGCCGGATTCG TGGCTGTCGAATTTGACACGCTGATGGACGTGGAGTTCAAGGACATTAATGGAAATCACGTCGGATTGGACCTCAATAGTATGGTTTCTTCACAGGTTGG GGATTTGGAAGCGGTGGATATAGATCTCAAGAGCGGTGATCTTGTCAACGCTTGGATCAATTATGACGGGTCAACCCGGGTGCTTAATGTCTCGGTTTCT TACTCTAGTCAGAAGCCGAAGGAGCCGATTCTATCGGCGAGTCTCGATCTCGATCCGTACGTCAATGATTTTATGTACGTCGGATTCTCCGGGTCGACTC AGGGGAGCACCGAGATTCACAGCGTCGAGTGGTGGAGTTTCAGCTCTCTATTCGATTCGACGACGCCATCTGGCGGTAACGGTAGTCCTAGTCCTGTCGC CGCTGCTTTCCCGCCGCCGCCTCCGGGGATTACTCTGCTCAATCCGACGGCGGATTCCGTCAAAGCGTCGCCGCCGTCATTGCCTCCGACCGCAATCGGC AGCAATCCACAGAAGAGCAGCAAATCATCTTCCTCCTGTCACAACCAGCTCTGCAAGCAAGGGCCAGGGGCGGTGGCCGGAGTAGCAACCGCCAGCGCAT TTCTCGTCATTTTCGCCGGAGTACTTATCTGGATATTTTCCAAGAGAACAAAAAGGGTGAAAAGGTCGTCGGAGTCATTCGCATCGGAGGTAATCAAAAT GCCGAAGGAATTCACATACAAGGAGCTTAGATCAGCTACCAATTGCTTCAACTCCAATCGAATCATCGGCCACGGCGCGTTCGGCACCGTGTACAAAGGC ATCGTCCCCGAAACCGGCGACATTGTAGCGGTGAAGAAGTGTTCTCACAACGGGCAAGGTAAGAACGAATTCCTGTCGGAGCTATCAATAATCGGAACTC TCCGGCACCGGAATCTCGTCCGATTAATCGGATGGTGTCACGAAAAAGGCGAGATTCTATTGGTATACGATTTGATGCCCAACGGAAGCCTGGACAAGGC GCTATTCGAGTCGAGGATGATTCTACCATGGCCGCACAGGCGGAAAGTCTTAAACGGCGTCGCATCGGCGCTAGCGTATCTGCATCAGGAATGCGAGAAT CAAGTAATCCACCGGGACATTAAATCCAGCAATATTATGCTGGATGAAGGTTTCAACGCTAGGCTGGGAGATTTCGGGTTAGCAAGACAAGTGGAGCACG ACAAATCCCCTGACGCCACGGTGGCCGCCGGGACGATGGGGTATTTGGCGCCGGAGTATCTTCTCACCGGCAGAGCCACCGAGAAGACCGACGTGTTCAG CTACGGGGCGGTAGTTTTGGAGGTGGCGAGCGGAAGGAGACCGATCGAGAAAGACGCGGCCTCCACCGGAGGAAATTTGGTGGAGTGGGTGTGGACCTTA CACCGGGAAGGGAGGCTGTTGACGGCGGCCGACCCGCGGCTAGAAGGGGAGTTCGAGGAAGGGGAAATGCGGAGGGTACTGTTAGTGGGCCTTGCCTGCT CCCACCCGGACCCATTGGCCCGGCCCACAATGAGAACCGTGGTCCAAATGTTGGTGGGAGAGGCGGAAGTGCCGGTGGTACCGACAGCGAGGCCGGCGAT GAGTTTCAGCACTTCGCATTTGTTGATGAGCTTGCAGGACAGCGTGTCGGACTGTACCGCCGCCATGATTAGGCTCTCGTCTTCCTCTTCCGCCGGNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTAGTTAGTGGGGGCGGCGGCTGTTAA
AA sequence Show only first row Show all	>Lus10019923 pacid=23164089 polypeptide=Lus10019923 locus=Lus10019923.g ID=Lus10019923.BGIv1.0 annot-version=v1.0 MLPSPPLIALSVFLLCSLTSAATEFDFGTLTLSSLKLIGDAHLNNGSVRLTRDLAVPNSGSGRALYSKPIRFRNPGTRSITSFSTFFSFTVTDLNPSSIG GGLAFLISPIPDAIGAAGGCLGLFSADGLAAGFVAVEFDTLMDVEFKDINGNHVGLDLNSMVSSQVGDLEAVDIDLKSGDLVNAWINYDGSTRVLNVSVS YSSQKPKEPILSASLDLDPYVNDFMYVGFSGSTQGSTEIHSVEWWSFSSLFDSTTPSGGNGSPSPVAAAFPPPPPGITLLNPTADSVKASPPSLPPTAIG SNPQKSSKSSSSCHNQLCKQGPGAVAGVATASAFLVIFAGVLIWIFSKRTKRVKRSSESFASEVIKMPKEFTYKELRSATNCFNSNRIIGHGAFGTVYKG IVPETGDIVAVKKCSHNGQGKNEFLSELSIIGTLRHRNLVRLIGWCHEKGEILLVYDLMPNGSLDKALFESRMILPWPHRRKVLNGVASALAYLHQECEN QVIHRDIKSSNIMLDEGFNARLGDFGLARQVEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSYGAVVLEVASGRRPIEKDAASTGGNLVEWVWTL HREGRLLTAADPRLEGEFEEGEMRRVLLVGLACSHPDPLARPTMRTVVQMLVGEAEVPVVPTARPAMSFSTSHLLMSLQDSVSDCTAAMIRLSSSSSAXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVSGGGGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	0	1
AT3G53380			Concanavalin A-like lectin pro...		Lus10026493 [exp]	3.3	0.8983
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	3.5	0.9038
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	3.6	0.9137
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	5.9	0.9045
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	6.7	0.9130
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	8.8	0.8932
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	8.9	0.9025
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	9.4	0.9091
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10030281 [exp]	9.5	0.9025
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10017864 [exp]	9.6	0.8599

Compare expression of checked genes

Lus10019923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.