Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42760 54 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026494 [exp] 165 / 2e-51 ND 36 / 0.004 Lus10005429 [exp] 61 / 9e-11 AT2G42760 111 / 1e-29 unknown protein Lus10007299 [exp] 61 / 1e-10 AT2G42760 115 / 7e-31 unknown protein Lus10015228 [exp] 57 / 1e-09 AT2G42760 115 / 5e-31 unknown protein Lus10015227 [exp] 50 / 4e-07 AT2G42760 93 / 1e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129800 [exp] 118 / 1e-31 AT2G42760 65 / 4e-12 unknown protein Potri.004G059900 [exp] 70 / 5e-14 AT2G42760 99 / 6e-25 unknown protein Potri.011G069900 [exp] 66 / 2e-12 AT2G42760 89 / 4e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019924 pacid=23164042 polypeptide=Lus10019924 locus=Lus10019924.g ID=Lus10019924.BGIv1.0 annot-version=v1.0 ATGGCTCTTACCGTTTGTTCACCACCATGCATCCTGGATGCCATGGACAGTCTTTGGTTCCATCATACCATTCTCTTCTTCTCATCAGCACTACTCCCTC ATCAATCTCAGCTCAGTGCTATTTCCTCATCTACTTCCCTCTCTTTACCTACTGATGAATCCCAACTTCACCAACAGCAAGCTCGAATCGACCACGACGA GGAAGAATCATCAATAACCTCTCCACCTTCCCAAAAGGATGAAGGAGAAGGAGAAGAGGAAGCTAGAAATATAATTAGACCAACAATAAGGGTGAGTCCA GTTACAGGTAGAAGCCGGTCATATTCTTCATCTCCATTAACCAAGAAACGGCACCGCAGAAGACTCGGCAACAGAGCTACTAGCAGCAGCGAACAAAAGC AAGGGTCGACGACGATGCAGCCATTCACGATATTCGAGAGAACAAGCAGCTGCAGGAGCTTAATTAGGGAGCTGGAAATGGAGGAAGTTAAAGGGTTCAT GGATCTGGGTTTCAAGTTCAAGGCAGAGAGCCTCAGTCCCAGAATGAAGACCGTGGTCCCTGGTTTACAGAGGCTATCCGGAGGAGGAGGAGGAATTGTA ATTAGTAACTGTAATGATGACGTAATCACTGAAGATGATGATGATGATGAGGGGGTGATTATAAGGCCATATTTGTCGGAAGCGTGGCTGATAAGAAGGG CTAATTCACCGCCGCCGCTACTTAACGTGAGGAGGATTCATGGTGCTGCAGCACCTGATCTGAGGCGACATATCAAGTTTTGGGCCAGGACTGTCGCCAC AGTTATTCAACAGGAATCTTATTGA
AA sequence Show only first row Show all	>Lus10019924 pacid=23164042 polypeptide=Lus10019924 locus=Lus10019924.g ID=Lus10019924.BGIv1.0 annot-version=v1.0 MALTVCSPPCILDAMDSLWFHHTILFFSSALLPHQSQLSAISSSTSLSLPTDESQLHQQQARIDHDEEESSITSPPSQKDEGEGEEEARNIIRPTIRVSP VTGRSRSYSSSPLTKKRHRRRLGNRATSSSEQKQGSTTMQPFTIFERTSSCRSLIRELEMEEVKGFMDLGFKFKAESLSPRMKTVVPGLQRLSGGGGGIV ISNCNDDVITEDDDDDEGVIIRPYLSEAWLIRRANSPPPLLNVRRIHGAAAPDLRRHIKFWARTVATVIQQESY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42760			unknown protein		Lus10019924 [exp]	0	1
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	1.4	0.9307
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Lus10008822 [exp]	2.0	0.9042
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	3.5	0.9172
					Lus10018648 [exp]	4.9	0.8917
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	5.3	0.8671
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10003719 [exp]	5.5	0.9056
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10018647 [exp]	5.7	0.8873
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	7.4	0.9011
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	10.0	0.8800
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	10.4	0.8860

Compare expression of checked genes

Lus10019924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.