Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09740 348 / 1e-121 ATSYP71, SYP71 syntaxin of plants 71 (.1) AT3G45280 281 / 5e-95 ATSYP72, SYP72 syntaxin of plants 72 (.1) AT3G61450 264 / 2e-88 ATSYP73, SYP73 syntaxin of plants 73 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026495 [exp] 468 / 2e-168 AT3G09740 408 / 5e-145 syntaxin of plants 71 (.1) Lus10023178 [exp] 400 / 6e-142 AT3G09740 416 / 1e-148 syntaxin of plants 71 (.1) Lus10015075 [exp] 397 / 1e-140 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10036118 [exp] 297 / 3e-101 AT3G45280 363 / 3e-127 syntaxin of plants 72 (.1) Lus10036377 [exp] 287 / 2e-93 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10014759 [exp] 257 / 9e-82 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10007411 [exp] 49 / 2e-07 AT3G09740 65 / 1e-13 syntaxin of plants 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088200 [exp] 371 / 2e-130 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.006G129500 [exp] 364 / 4e-128 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.014G087400 [exp] 296 / 5e-101 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10019925 pacid=23164035 polypeptide=Lus10019925 locus=Lus10019925.g ID=Lus10019925.BGIv1.0 annot-version=v1.0 ATGACCGTGATCGACATTCTCACGAGAGTCGATGCGATCTGCCAGAAGTATGACAAATACGATGTCGAGAAGCAGAAGGATCTCAATGTCTCGGGGGACG ATGCCTTTGCCCGCGGCTACGCAGCTGTTGACGCCGAAATCGAAGCCGCTCTTGAGAAAGCAGAACTTGCTTCCAAGGAGAAAAGTAAGGCATCAGCGGT AGCTCTTAATGCTGAGCTTCGTCGCACCAAGGCAAAGTTACTTGAGGAGGTCCCGAAGTTGCAGAGACTCGCGATAAAGAAGGTAAAAGGCCTTTCAACT GAAGAGCTTACTGCCCGTAATGACTTGGTTCTTGCATTACCGGACAGAATTCAAGCTATTCCAGATGGAAATGCTGCTGCACCAAAACAAACTGGAGGTT GGGGCTCCTCTGCTACCAGGGCAGAAATAAAATTTGATTCAGATAATCGGTTTGATGATGAATATTTTCAAGAATCTGAGCAGTCCAGCAAGTTTAGGCA GGAATATGACACACGTAAACAGAAGCAGGATCAAGGTCTTGAGATGATTTCAGAAGGTTTAGACACTTTGAAAAACATGGCTCATGACATGAATGAGGAA ATGGATAGGCAAGTTCCTCTGGCGGATGAAATTGATGCCAAGGTCGACAAGGCAGCTGCTGATCTTAAGAACACCAATGTCAGACTTAAGGACACTGTTA TGCAGTTAAGATCCAGCAGAAATTTCTGCATCGATATTGTTCTGTTGTGCATAATCTTGAGCATTGCTGCTTATTTGTACAATTTGTTTGGTAAGTTGCC TGAACCGTGTGTGGATGGCTTTTGCAGTGTGTTGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10019925 pacid=23164035 polypeptide=Lus10019925 locus=Lus10019925.g ID=Lus10019925.BGIv1.0 annot-version=v1.0 MTVIDILTRVDAICQKYDKYDVEKQKDLNVSGDDAFARGYAAVDAEIEAALEKAELASKEKSKASAVALNAELRRTKAKLLEEVPKLQRLAIKKVKGLST EELTARNDLVLALPDRIQAIPDGNAAAPKQTGGWGSSATRAEIKFDSDNRFDDEYFQESEQSSKFRQEYDTRKQKQDQGLEMISEGLDTLKNMAHDMNEE MDRQVPLADEIDAKVDKAAADLKNTNVRLKDTVMQLRSSRNFCIDIVLLCIILSIAAYLYNLFGKLPEPCVDGFCSVLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	0	1
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	1.0	0.8816
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	2.4	0.8710
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	2.6	0.8265
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	3.0	0.8580
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	3.2	0.8413
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	5.2	0.8116
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	6.3	0.8221
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	6.6	0.8572
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	9.5	0.8304
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10005280 [exp]	9.8	0.7443

Compare expression of checked genes

Lus10019925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.