Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03150 308 / 2e-99 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT3G45260 301 / 1e-97 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G66730 295 / 2e-94 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G03840 292 / 2e-93 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 290 / 7e-93 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G50700 289 / 7e-93 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT4G02670 288 / 7e-93 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT1G55110 288 / 2e-92 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G13810 286 / 4e-91 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT2G02080 281 / 8e-89 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026497 [exp] 658 / 0 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10010820 [exp] 291 / 6e-96 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10041723 [exp] 299 / 7e-96 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 294 / 7e-94 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 294 / 2e-93 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004840 [exp] 290 / 7e-92 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004497 [exp] 286 / 2e-91 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 284 / 1e-90 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10041356 [exp] 291 / 1e-88 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129300 [exp] 329 / 1e-107 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 325 / 5e-106 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 301 / 4e-97 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 298 / 4e-96 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G048000 [exp] 295 / 9e-95 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.008G142500 [exp] 295 / 7e-94 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1) Potri.003G036900 [exp] 294 / 1e-93 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.007G028800 [exp] 293 / 2e-93 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G215100 [exp] 290 / 4e-93 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.014G180600 [exp] 291 / 8e-93 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019927 pacid=23164046 polypeptide=Lus10019927 locus=Lus10019927.g ID=Lus10019927.BGIv1.0 annot-version=v1.0 ATGTCTTCAGGTGGTGGAGATCCTTTCTCACTCACTCTTCCTCCATTTTTCCCTCCTTTGCAACATGAGCAAACTCATCAGCTTCCTCCTCTTCCTCCGC CGCCTCCCGCCTCAGCGAACCCTAACCCTAACCTTACCAGCAGCAACAACAACAGAAAGAAGAGAAACTTACCAGGTACCCCAGATCCAGATGCGGAGGT CATGGCGCTATCTCCAAAATCTCTCATGGCGACCAACAGGTTCCTTTGCGAGATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTGCAGCTACACAGG AGAGGACACAACCTGCCGTGGAAGTTGAAGCAGAGGAACACCAAAGAACCCATAAGGAAGAAAGTCTATATATGTCCCGAGAAGACCTGCGTCCACCACG ACCCTTCTCGAGCTTTGGGAGACCTTACAGGGATCAAGAAGCACTTCAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCGAAGAAGTA CGCCGTGCTGTCCGACTGGAAAGCCCACTCCAAGACCTGCGGCACCCGCGAGTACAAGTGCGACTGCGGCACCTTGTTCTCCAGGAAAGATAGCTTCATA ACACATAGAGCTTTCTGTGATGCGTTGGCCGATGATAGCTTGAGGTTCAATAGTGCTAATGCTGCTGCTGCTGCTTCTGCTACAAATCTGAATTTCGAGA GTATTGGTAATAATACTCAAAATGATAATAATCCGAGTCAGCTGCCACGTCACCACCAAGGGTTTCATAATCAAGATATGAATTCTCAATTTGGCAATTT CATCAACTCCTTGGCGGCCGGGAACCACAACGGTATGAATATGATGATGACGATGATGCCGAATAATAATAGTACTAGCACTAACGGCAGTTACTTAACG GACGAGATGGTTCAAATGGGAAGGTCGTCGTCGTCAACGGGATCAGGAATGAAGGAAGAAGCGTTACCGTCATTGTACTCCAGCCAGATGATGAGTCACG AAAACAAGCAGCAGCAATCCAACGGTGGGAGATCGCCCATGTCGGCTACCGCGTTATTACAAAAGGCAGCTCAGATCGGTTCCACCAGATCGTCCTCCAG CGGCGGTGGTACCATTGTTAACAACACCCAGCAGTCGTCTCTCTTCGGAATGACGAATATGCCCCCACCGATGGATCAGAATTCATTTGAGCAGCTTATG ATGATGCAAGGAAGCGGCAAGTTACAAGGAGTTGGAATCATGGAGTCGATTATTAATAATAATGATAACCATCAAAATAATAATAATAATAATTACACGT CGGATTCGATGGAGAGCAGGTTGACGAGGGATTTCCTGGGGATGAGTGGCGGGAGGCCGTTTCTACAGCAGGAAATAGCGAGGTTCGCTAACTCGATGAA CTCTTCGTCCTCGTTGGGGTTTGCAGCTACCGCATCAGGGAATCCCTTGTGA
AA sequence Show only first row Show all	>Lus10019927 pacid=23164046 polypeptide=Lus10019927 locus=Lus10019927.g ID=Lus10019927.BGIv1.0 annot-version=v1.0 MSSGGGDPFSLTLPPFFPPLQHEQTHQLPPLPPPPPASANPNPNLTSSNNNRKKRNLPGTPDPDAEVMALSPKSLMATNRFLCEICNKGFQRDQNLQLHR RGHNLPWKLKQRNTKEPIRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVLSDWKAHSKTCGTREYKCDCGTLFSRKDSFI THRAFCDALADDSLRFNSANAAAAASATNLNFESIGNNTQNDNNPSQLPRHHQGFHNQDMNSQFGNFINSLAAGNHNGMNMMMTMMPNNNSTSTNGSYLT DEMVQMGRSSSSTGSGMKEEALPSLYSSQMMSHENKQQQSNGGRSPMSATALLQKAAQIGSTRSSSSGGGTIVNNTQQSSLFGMTNMPPPMDQNSFEQLM MMQGSGKLQGVGIMESIINNNDNHQNNNNNNYTSDSMESRLTRDFLGMSGGRPFLQQEIARFANSMNSSSSLGFAATASGNPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	0	1
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	6.0	0.6662
AT3G24730			mRNA splicing factor, thioredo...		Lus10011878 [exp]	6.2	0.6650
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10029622 [exp]	6.9	0.7479
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	8.5	0.7080
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	10.9	0.6779
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	12.5	0.6780
AT5G20700			Protein of unknown function (D...		Lus10022948 [exp]	12.7	0.6978
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	15.5	0.6509
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	18.3	0.6842
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	21.9	0.6710

Compare expression of checked genes

Lus10019927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.