Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03160 590 / 0 ATP58IPK homolog of mamallian P58IPK (.1) AT5G01390 80 / 1e-16 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 78 / 9e-16 DNAJ heat shock family protein (.1.2) AT3G08910 77 / 3e-15 DNAJ heat shock family protein (.1) AT2G20560 77 / 3e-15 DNAJ heat shock family protein (.1) AT4G39960 76 / 2e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 75 / 3e-14 DNAJ heat shock family protein (.1) AT1G80030 73 / 1e-13 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT1G56300 69 / 1e-13 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 72 / 2e-13 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015078 [exp] 747 / 0 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1) Lus10026498 [exp] 726 / 0 AT5G03160 576 / 0.0 homolog of mamallian P58IPK (.1) Lus10023181 [exp] 575 / 0 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10017687 [exp] 79 / 9e-16 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 77 / 4e-15 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10041254 [exp] 77 / 5e-15 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 76 / 6e-15 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10031336 [exp] 77 / 9e-15 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10011484 [exp] 77 / 1e-14 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088600 [exp] 688 / 0 AT5G03160 570 / 0.0 homolog of mamallian P58IPK (.1) Potri.007G136700 [exp] 81 / 2e-16 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 80 / 3e-16 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 78 / 2e-15 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 77 / 3e-15 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 76 / 6e-15 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 76 / 1e-14 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.015G035300 [exp] 76 / 1e-14 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.011G057601 [exp] 76 / 1e-14 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 75 / 3e-14 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10019928 pacid=23164016 polypeptide=Lus10019928 locus=Lus10019928.g ID=Lus10019928.BGIv1.0 annot-version=v1.0 ATGATGAATCTAGTTAAGCATTCATGGGCGGTGGCGCAGGATGGAGTGGCGTGGAGAGGGATAGTGTACACAATCTTCATTCTGCATTTCGTATTCGTTT GCCAGCTCCTTCTTCTCCAACCTCTCGTCTCCGCTTCTGTTGCTACAGATACCAAAACTAAAAGTACTGCGGAGTTGTTCGACAGAGTTTCTCAAAGTGT AAAAGTCAAGCGCTATAGTGATGCACTTGATGATCTGAACTCTGCTATTGAGGCTGATCCATCGCTTTCAGAAGCATATCTTCGGCGTGCGTCCATTCTT CGTCAAATATGCAGATATGATGAATCAGAAAAGAGCTATCAGAAGTTTCTGGAGCTGAAACCTGGACACGCAGCTGCAGAAAAGGAGCTTTCTCAGTCAA ATCAAGCAAAGAGTGCCCTGGATACAGCTTTCACTCTTTTTAGCTCCGGGGATCACTCAAAAGCCTTGGAGTTTGTTGAAAAAGTTGTGCTTGTTTTCTC TCCAGCCTGCTCTAAGGCAAAAATACTCAAGGTGAGGTTACTGTTGGGTGTTAAAGACTTTTCTGCTGCCATCTCTGAAAGCGGACGTATTCTGAGGGAT GATGAAAGTAATCTAGAGGCGCTCCTGCTCCGTGGCCGTGCCTACTACTATTTAGCAGACCACGATGTTGCCTCGAAGCATTATCAAAAAGGTCTACGTC TTGATCCGGAGCATAGTGAACTCAAGAAAGCATACTTTGGGTTGAAGAATTTACTAAAAAAGACCAAAAGTGCTGAGGATAATGCAAACAAGGGTAAACT GCGAGTGGCAGTGGAGGACTACCGAGCAGCACTAACCTTGGACCCTGACCATCTTGCACATAATGTCCATCTTCATCTGGGTTTGTGCAAGGTCCTTGTT AAGCTTGGTCGGGGAAAAGATGCTTTAGCAAGTTGCAACGATGTTCTTAGTATAGATGAAGATCTTCTTGAAGCTTTAGTTCAGAGGGGTGAAGCTAAAC TCCTAACAGAAGACTGGGAAGGAGCTGTTGAGGATCTGAAATCAGCAGCTCAACAATCTCCCCAGGATATGGATATTCGCGAAGCCCTGATGCGGGCAGA GAAAGCTCTCAAGATGAGCAAGCGAAAAGACTGGTATAAGATTTTAGGCGTGTCGAGAACCGCTTCCATAGCTGAGATAAAGCGTGCCTACAAGAAACTT GCTTTGCAATGGCACCCTGATAAGAATGTTCAGAACGGAGAAGAAGCAGAGAACAAGTTCCGAGAAATAGCTGCAGCATACGAGGTCCTTGGAGATGATG AGAAGCGTGCAAGATTCGACAATGGAGAAGACCTTGAAGACATGGGGATGGGCGACGGTGGTGGTAACCCTTATGGTGGTGGCCAGCATTTCTCATTCCA GTTCGATGGAGGCTTTCCGGGCGGTTTTGGTGGGTTCGATGGAGGATTCCCTGGCGGAGATGGTGGTGGTTTTCAGTTTCAATTTTGA
AA sequence Show only first row Show all	>Lus10019928 pacid=23164016 polypeptide=Lus10019928 locus=Lus10019928.g ID=Lus10019928.BGIv1.0 annot-version=v1.0 MMNLVKHSWAVAQDGVAWRGIVYTIFILHFVFVCQLLLLQPLVSASVATDTKTKSTAELFDRVSQSVKVKRYSDALDDLNSAIEADPSLSEAYLRRASIL RQICRYDESEKSYQKFLELKPGHAAAEKELSQSNQAKSALDTAFTLFSSGDHSKALEFVEKVVLVFSPACSKAKILKVRLLLGVKDFSAAISESGRILRD DESNLEALLLRGRAYYYLADHDVASKHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSAEDNANKGKLRVAVEDYRAALTLDPDHLAHNVHLHLGLCKVLV KLGRGKDALASCNDVLSIDEDLLEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMDIREALMRAEKALKMSKRKDWYKILGVSRTASIAEIKRAYKKL ALQWHPDKNVQNGEEAENKFREIAAAYEVLGDDEKRARFDNGEDLEDMGMGDGGGNPYGGGQHFSFQFDGGFPGGFGGFDGGFPGGDGGGFQFQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	0	1
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035360 [exp]	4.1	0.7469
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10039014 [exp]	7.9	0.7153
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	10.5	0.7124
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10029766 [exp]	13.5	0.7267
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10026498 [exp]	14.3	0.6528
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	16.5	0.7189
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	19.8	0.6953
AT5G03490			UDP-Glycosyltransferase superf...		Lus10036837 [exp]	21.8	0.6233
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	23.9	0.7126
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	36.2	0.6888

Compare expression of checked genes

Lus10019928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.