Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53390 725 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37160 713 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G67320 51 / 2e-06 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G43770 50 / 4e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 46 / 5e-05 WD-40 repeat family protein / notchless protein, putative (.1) AT5G14050 45 / 9e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 44 / 0.0003 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G60940 43 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G05970 44 / 0.0005 NEDD1 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15850 41 / 0.0005 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026500 [exp] 959 / 0 AT3G53390 785 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000150 [exp] 486 / 4e-171 AT3G53390 434 / 3e-151 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 55 / 1e-07 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 52 / 9e-07 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10026837 [exp] 52 / 2e-06 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020214 [exp] 51 / 2e-06 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 49 / 6e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10008853 [exp] 49 / 2e-05 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10023255 [exp] 47 / 4e-05 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088800 [exp] 760 / 0 AT3G53390 813 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G129100 [exp] 745 / 0 AT2G37160 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G058000 [exp] 52 / 1e-06 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.T125206 [exp] 50 / 5e-06 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 50 / 6e-06 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 49 / 6e-06 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G144400 [exp] 49 / 9e-06 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.001G026800 [exp] 49 / 1e-05 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G111800 [exp] 48 / 1e-05 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.007G050100 [exp] 48 / 2e-05 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10019930 pacid=23164002 polypeptide=Lus10019930 locus=Lus10019930.g ID=Lus10019930.BGIv1.0 annot-version=v1.0 ATGATCAACAGCAGTAACGGTATGATTTCGACGTCTTCGTCAGCGGCGGCAGCCAACGCCCAATCGCCTGGATTGAAGACCTATTTCAAAACCCCGGAAG GGAGGTACAAGCTCCACTACGAGAAAACGCATCCTTCTGGTCTCCTTCACTATGCCCACGGCAAAACTGTCACTCAGGTAACTCTAGCTAACCTCAAAGA TAAACCAGCACCACAGACCCCAACTTCTTCTTCTTCAACCTTCAGTTCTAGCAGCGGAGTGCGATCAGCTGCAGCCAGATTGTTGGGCGCTGGCAATGGG AGTCGTGCACTTAGTTTCGTTGGAGGCAATGGTGGGAGTAAAAGCGTTAGTGGTGCCAGTAGGATTGGTTCCTTAGGGGTTTCAAGCTCAAGTAGTAGTG CTATGATAAATCCAAACTTCGACGGGAAAGGGAATTATCTGATCTTTAACGTTGGTGATGCTATTTTCATAAGCGATCTCAACTCTCAAGATAAGGATCC AATCAAATCCATCCATTTTAGTAATTCGAACCCCGTTTGTCATGCCTTTGATCCGGATGCGAGGGATGGACATGATTTGGTTATTGGTTTGAGTTCCGGT GATGTCTATTCGGTATCACTGAGACAACAGTTGCAGGATGTTGGGAAGAAACTGGTTGGGGCCCTGCACCATAACAAAGATGGTTCTGTAACTAACAGCT GGCCATTTCCTTTTTCGTCAACTCTGTATTTCGAATGTGATTTACTGAAGGTGGTGGAAAATGTCAGAGAAGAAGCTTGTTATTACATAGAAGCTCCACA TAACAAAGATGGTGCAGGAGATGCTTCGTTCCCAGTTGTCAAGGATCAGGCCCAGTTTTCTGTTTCACATGCACGTTACAGCAAGAGTAACCCTATTGCC CGGTGGCACATTTGCCAAGGTTCAATAAATAGTATTACTTTCTCCGCTGACGGGACCTACTTAGCAACTGTTGGAAGAGATGGATACCTTAGGGTTTTTG ACTACACAAAGGAGCAACTTACTTGTGGTGGAAAGAGTTATTATGGAGCTCTACTATGTTGTGCTTGGAGCATGGATGGGAAATACATTTTGACTGGTGG CGAAGATGATCTCGTTCAAGTTTGGAGTATGGAAGATCGGAAAGTTGTCGCATGGGGTGAAGGACATAACTCATGGGTGAGTGGGGTGGCGTTTGATTCA TACTTTTCATCACCAAATGCAGACGGTACCACAGAAACGGTAATATACCGGTTTGGTTCTGTTGGCCAGATGACTTATGACTCTCCATCTCCGGATCCCA TCAAATTAGTCAATGGAACTCGCGACGCTCCCATAACTCCGTTTCTGGCTTCGTTTTGTGCACAGGATACGCAGTTGCTGCTGTGGGACTTGGAAATGGA CGAAATCGTGGTGCCACTGCGTCGAGCCCCCGGCGGTTCCCCAACTTTTAGTGCTGGCAGTCAATCATCCCACTGGGACAATGTGATCCCAGTAGGCACT CTACAACCCGCTCCGTGCACTCGAGACGTTCCAAAACTCTCTCCCCTAGTCGTTCATCGCGTTCACACGGAGCCGCTTTCCGGGTTAATCTTCACTCAAG AATCCGTCGTTACAGCTTGTCGAGAAGGCCACATCAAAGTATGGATGAGACCTGGAGCTGTAGATAGCCAGAATACTACGGCGAACAACTCGGAGACCGT TTTGAGCGGCAGCTTGAAAGAGAAACCTTTGTTATCAAGCAAGAGTGGCACTGCTGGTTACAGGCAATGA
AA sequence Show only first row Show all	>Lus10019930 pacid=23164002 polypeptide=Lus10019930 locus=Lus10019930.g ID=Lus10019930.BGIv1.0 annot-version=v1.0 MINSSNGMISTSSSAAAANAQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQVTLANLKDKPAPQTPTSSSSTFSSSSGVRSAAARLLGAGNG SRALSFVGGNGGSKSVSGASRIGSLGVSSSSSSAMINPNFDGKGNYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDPDARDGHDLVIGLSSG DVYSVSLRQQLQDVGKKLVGALHHNKDGSVTNSWPFPFSSTLYFECDLLKVVENVREEACYYIEAPHNKDGAGDASFPVVKDQAQFSVSHARYSKSNPIA RWHICQGSINSITFSADGTYLATVGRDGYLRVFDYTKEQLTCGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS YFSSPNADGTTETVIYRFGSVGQMTYDSPSPDPIKLVNGTRDAPITPFLASFCAQDTQLLLWDLEMDEIVVPLRRAPGGSPTFSAGSQSSHWDNVIPVGT LQPAPCTRDVPKLSPLVVHRVHTEPLSGLIFTQESVVTACREGHIKVWMRPGAVDSQNTTANNSETVLSGSLKEKPLLSSKSGTAGYRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53390			Transducin/WD40 repeat-like su...		Lus10019930 [exp]	0	1
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10011101 [exp]	1.4	0.9283
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	3.7	0.9247
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10033144 [exp]	5.9	0.9137
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	10.2	0.9162
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	11.7	0.9148
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10043222 [exp]	13.3	0.8784
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	14.6	0.9211
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030455 [exp]	16.5	0.8970
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10018560 [exp]	16.7	0.8809
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	17.2	0.9171

Compare expression of checked genes

Lus10019930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.