Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09760 361 / 1e-119 RING/U-box superfamily protein (.1) AT5G60580 337 / 3e-110 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 326 / 2e-106 RING/U-box superfamily protein (.1.2) AT3G06330 141 / 1e-36 RING/U-box superfamily protein (.1.2.3) AT5G18760 118 / 8e-29 RING/U-box superfamily protein (.1) AT2G37950 47 / 1e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 42 / 9e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G05830 44 / 0.0001 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 41 / 0.001 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026501 [exp] 808 / 0 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10037410 [exp] 368 / 7e-122 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 362 / 4e-120 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 354 / 4e-117 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 371 / 1e-115 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10012791 [exp] 173 / 3e-48 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 167 / 5e-44 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 131 / 3e-33 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 98 / 1e-22 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129000 [exp] 476 / 1e-164 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.009G013300 [exp] 383 / 7e-128 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.016G022900 [exp] 317 / 2e-102 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 312 / 9e-101 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.010G014800 [exp] 182 / 1e-51 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014950 [exp] 178 / 2e-50 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 141 / 8e-37 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.010G195100 [exp] 47 / 1e-05 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 44 / 5e-05 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 44 / 8e-05 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10019931 pacid=23164090 polypeptide=Lus10019931 locus=Lus10019931.g ID=Lus10019931.BGIv1.0 annot-version=v1.0 ATGGCTTCATCGGTTAATGAAGGAGAAGAACTCATGCCTAATAAGGATGCCACCTCTAAACAGAGAACTCCTGGCGGAATCCCAGTTGATTCCTCGCTTC AAAGAGTAACTAATGTGCCTTTTCTGTCTTGTTCTTCAATTTTCACCTACAGCGGCAAAATCCTGGGATTTGTTCATAAGCTGGACTATCTTCCAGGTGC TGGAAGTTCGACGGAGATCATTGAGGAAGGTCAGCATCGGCGATGGCAGCAAGACCTGATCGTGGAGATTCCAGCGAGGACTACAGAAGAAGTGGGGGAC GATTTTTTTGAAATCCCAATGCCGTCTTACCGGAGTCCAACGCCGAAAAGAGTCAACTTTTCTCCTCTACGCAGTCCAGGTTTCGCCAGATTGAACGATT CTTCCCCTGATGCTTCCAAGACGAAATCTACTCGCAAGAATTTGCTTCCAAAGCTGAGCTTCAAGTATAGAAGAAGTACTGCAGATGTTGAAAGGGCCGC AATTCTGGCACTTGGAGGTTCGCCAGATGCAGTCAGAGAGAGGTCTTTCTTCCGTAGAAACACGTCTTTCACTAAACTTTTCGGTCTCACGCCGAGGATT AAGAACACAGCATCATCTCTGCCTGTTTCGCCCATTTCTCGCTCGAATCCCGAGTCCACCCATGGAGGGAATGCAATTGATCTACTAATTTATGCTAAAG GAGAAGCGAAATTACCGATTCATCGTTCTCGTTCGGTTCCTGTTCTTAACAAAGATGTGAGCGTAAGGCAAATGGATTCAGTAGGTGGATTGTTTCGTGT TATCCCGACCACTCCACGATCCATCGTCCCGGCTACATCAATGCCATCCCCTGCAGCTGATACTGATGAAAGTGACGACGGTGGTGAAGATATTCCGGAA GAGGAAGCTGTTTGCCGAATCTGCATGGTGGAGTTAGGCGAAGGTGCAGAAAGCCTCAAGATGGAATGCAGTTGTAAGGGTGAACTTGCTTTAGCCCACC AAGAATGTGCAGTGAAGTGGTTTAGCATCAAAGCCGTAGGAATGGAGCTCATAATCCCGAGATGGCTCAATACAGGCAAGGTATGGCAGGACGTTCCCAT TCTTGTTATAGTCAGCATGCTTGCTTTCTTCTGTTTCCTTGAGCAGCTTCTGGTGGGAAAACTCGGGTCCGGTGCAATCGCTATATCTCTTCCATTTTCC TGTAATTTGGTTCTGCTGGCCTCCATGACTTCTACCACAATGGTGAAAAGAAAATATGTCTGGGTTTACGCAACTGCACAATTCGCACTGGTTGTTCTCT CAGGTCATCTTTTCTACTCACTGTTGGGACGATTCCAGCTTCATGTGCAGGCTGTCCTATCAGTTCTTCTAGCTACCTTCACTGGCTTTGGGGTGGCAAT GTGTGCGAGTTCTTGTCTAATTGAGATTCTGAAATGGAGAAGACAGCGGCGATTTCAAGCAAGCCAGCAGGGCGGAGCTGAGAATTCGGCGGAGGAAGTT ACTACCGAAGCTCCACTCTCTGCAGTGACTAATCCTAGCCAACGAGAAGCAGCGGCAGGAGGTGCTGAAACAACGCCTCCTGTGTAG
AA sequence Show only first row Show all	>Lus10019931 pacid=23164090 polypeptide=Lus10019931 locus=Lus10019931.g ID=Lus10019931.BGIv1.0 annot-version=v1.0 MASSVNEGEELMPNKDATSKQRTPGGIPVDSSLQRVTNVPFLSCSSIFTYSGKILGFVHKLDYLPGAGSSTEIIEEGQHRRWQQDLIVEIPARTTEEVGD DFFEIPMPSYRSPTPKRVNFSPLRSPGFARLNDSSPDASKTKSTRKNLLPKLSFKYRRSTADVERAAILALGGSPDAVRERSFFRRNTSFTKLFGLTPRI KNTASSLPVSPISRSNPESTHGGNAIDLLIYAKGEAKLPIHRSRSVPVLNKDVSVRQMDSVGGLFRVIPTTPRSIVPATSMPSPAADTDESDDGGEDIPE EEAVCRICMVELGEGAESLKMECSCKGELALAHQECAVKWFSIKAVGMELIIPRWLNTGKVWQDVPILVIVSMLAFFCFLEQLLVGKLGSGAIAISLPFS CNLVLLASMTSTTMVKRKYVWVYATAQFALVVLSGHLFYSLLGRFQLHVQAVLSVLLATFTGFGVAMCASSCLIEILKWRRQRRFQASQQGGAENSAEEV TTEAPLSAVTNPSQREAAAGGAETTPPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09760			RING/U-box superfamily protein...		Lus10019931 [exp]	0	1
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10014165 [exp]	1.0	0.9371
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	5.1	0.9318
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	6.9	0.8954
AT5G55860			Plant protein of unknown funct...		Lus10016626 [exp]	11.5	0.9076
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	17.5	0.8904
AT4G15563			unknown protein		Lus10033973 [exp]	18.7	0.8854
AT1G76360			Protein kinase superfamily pro...		Lus10030743 [exp]	19.7	0.8977
AT3G27870			ATPase E1-E2 type family prote...		Lus10008777 [exp]	21.8	0.8714
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	24.4	0.9035
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	28.0	0.8984

Compare expression of checked genes

Lus10019931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.