Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53400 352 / 8e-118 unknown protein AT5G03190 325 / 2e-107 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT5G01710 102 / 2e-23 methyltransferases (.1) AT1G58120 74 / 4e-14 unknown protein AT1G24480 49 / 1e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026502 [exp] 805 / 0 AT3G53400 392 / 1e-133 unknown protein Lus10001267 [exp] 137 / 2e-35 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10012217 [exp] 135 / 9e-35 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10014232 [exp] 134 / 3e-34 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10022682 [exp] 110 / 4e-26 AT5G01710 698 / 0.0 methyltransferases (.1) Lus10026501 [exp] 73 / 2e-13 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10036941 [exp] 54 / 5e-08 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 54 / 9e-08 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128800 [exp] 451 / 1e-156 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 435 / 3e-150 AT3G53400 420 / 6e-144 unknown protein Potri.006G105100 [exp] 126 / 1e-31 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.016G128100 [exp] 124 / 6e-31 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 97 / 1e-21 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.002G104500 [exp] 68 / 4e-12 AT1G58120 283 / 1e-91 unknown protein Potri.017G047700 [exp] 59 / 3e-09 AT1G58120 254 / 6e-81 unknown protein Potri.007G113200 [exp] 57 / 9e-09 AT1G58120 252 / 6e-80 unknown protein Potri.010G052100 [exp] 52 / 2e-07 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10019932 pacid=23164000 polypeptide=Lus10019932 locus=Lus10019932.g ID=Lus10019932.BGIv1.0 annot-version=v1.0 ATGGAATTGAAAGGGTTTAGATCCCAGGCCGTTACCGAATCTGGGGCCAAGCACCTCTACCTGCGCTGCTTCGCGCTGGCTTTGATCCTCTCAACAATTC CCTTCCTCCAGTACTTATCTGGATCTGAATCTACGCTCTTGGACCCCATTTGGGGCTCTCTCGAGTGCGAGGAAGGCGTCAATTTGGCCGCCACTGTCAT CAGGGAGCTAACAAGCAAGCAACTTTTGGATCATAACGCTAAATCTCTCTGTGTCGGCGAAGGATCGGCCTCTGCTGTCTATGCATTGCGCGAATTAGGA TTCGCCAATGCCTCCAGTGCCGATAGGCACCCGTTCTTCTTCTTTCCCAAGAAGAAGAAGTACGTTTACCAGCTCGAATTCGAGGATAACTCGTTCGATT TCGTCTTCTCCTCCGGGGACCTATCTGTTCCCGTTAGTCTCGTCCTCGAGATCGAGCGAATTCTTAAACCCGGAGGAGTCGCTGCTGCTCTTGTCAGCAG CTCGGGCAGCTCGAACAGCGGTGATTTGATGATCCGTAACAACAACTTGGTTAGATCAGCAATGCCGATTTCCTCGCTGTTGAAATCCTCCAACATTGTT CATGTTGGCTATCTCAACAATGGAGGCTACACTCTGGTTGTTTTCAAGAAGAGATTCTACTGTGCCGATTACTTCGAGCGACTCCGCTTACCTTCCGAAT GCCATTCCGTTTCGAACAATAACCCCTTCATCGGGTTGTTAGAGCCGGCTGTTCAGAGCAAACACGCCGGGTTTGAAGAAAAGATTGCTTATTTGCCCAA GTTTCTGGATGTTTCTTCCAGGAACCGTATGGTATACGTAGATATTGGAGCGGGGGAGCATCTCACCTCGAATAATGTCGCATCATCTTGGTACTTGCCG CAATCTTATCCGATCGATCACAAGTCCTTCAACGTCTATATGGTCGATCACAACACCTCGGTGTTGCATTCCTTCGTGAAGAGGCCCGGTGTTACTTTCG TATATCATCCCGGCCTAGCTGGCAACGAGAATGAAGTCCGAGACCTCGACTTCGAGGATTTGGATCCGTTCGTGGAGGATCAGGGGTTCGATTTCCTCGC CTGGTTCCAGGAAACTGTGAGGTATGCGGATTTCGTGGTGATGAGGATGAATGCCGGCGAGGCTGAACTGAAGTTTCTGGTTGGTCTGTTTAGTACCGGT ACGATTTGCTCGGTGGACGAGTTGTTCCTTAATTGCTCGGGGAAAGGTTTGGCTAATGGTGCGGAATGTGTGGGGCTGGTTAAGAGCCTTCGTGCTGCTG GGGTGTTCGTGCATCAGTGGTGGGGAGACTAG
AA sequence Show only first row Show all	>Lus10019932 pacid=23164000 polypeptide=Lus10019932 locus=Lus10019932.g ID=Lus10019932.BGIv1.0 annot-version=v1.0 MELKGFRSQAVTESGAKHLYLRCFALALILSTIPFLQYLSGSESTLLDPIWGSLECEEGVNLAATVIRELTSKQLLDHNAKSLCVGEGSASAVYALRELG FANASSADRHPFFFFPKKKKYVYQLEFEDNSFDFVFSSGDLSVPVSLVLEIERILKPGGVAAALVSSSGSSNSGDLMIRNNNLVRSAMPISSLLKSSNIV HVGYLNNGGYTLVVFKKRFYCADYFERLRLPSECHSVSNNNPFIGLLEPAVQSKHAGFEEKIAYLPKFLDVSSRNRMVYVDIGAGEHLTSNNVASSWYLP QSYPIDHKSFNVYMVDHNTSVLHSFVKRPGVTFVYHPGLAGNENEVRDLDFEDLDPFVEDQGFDFLAWFQETVRYADFVVMRMNAGEAELKFLVGLFSTG TICSVDELFLNCSGKGLANGAECVGLVKSLRAAGVFVHQWWGD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53400			unknown protein		Lus10019932 [exp]	0	1
AT3G53400			unknown protein		Lus10026502 [exp]	1.0	0.9845
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	1.4	0.9613
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	7.5	0.9557
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	8.8	0.9406
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	9.5	0.9514
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	10.4	0.9212
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10032400 [exp]	12.5	0.8978
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10019850 [exp]	13.9	0.9363
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	14.1	0.9236
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	15.2	0.9487

Compare expression of checked genes

Lus10019932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.