Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 362 / 6e-124 Protein kinase superfamily protein (.1) AT3G09010 323 / 1e-108 Protein kinase superfamily protein (.1) AT1G56130 309 / 1e-96 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 306 / 1e-95 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 306 / 2e-95 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 304 / 1e-94 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 303 / 2e-94 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 296 / 3e-92 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 294 / 2e-91 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 293 / 1e-90 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026503 [exp] 688 / 0 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10042460 [exp] 370 / 3e-127 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 369 / 3e-126 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10023510 [exp] 357 / 5e-121 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1) Lus10040392 [exp] 356 / 7e-121 AT3G09010 323 / 2e-107 Protein kinase superfamily protein (.1) Lus10028149 [exp] 330 / 3e-111 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 329 / 1e-110 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10004825 [exp] 323 / 2e-108 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10011193 [exp] 317 / 3e-106 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128500 [exp] 515 / 0 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 415 / 4e-145 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 361 / 2e-123 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 360 / 3e-123 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 351 / 2e-118 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 346 / 2e-117 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.008G040800 [exp] 331 / 1e-112 AT1G16670 289 / 5e-96 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 328 / 1e-110 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 323 / 8e-109 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 323 / 9e-109 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10019933 pacid=23163949 polypeptide=Lus10019933 locus=Lus10019933.g ID=Lus10019933.BGIv1.0 annot-version=v1.0 ATGAAGGTCAAATTATGTGGGTCAACTTGCTTCGTGTCTCCTGAACTCAAACCTATCACCGCCATCACAACAGGTGAAGAAACCTCTGGGAACTTGCGGA TATTCACTCAGAACGAACTTAAACGGGCTACTCAAAGCTTCTCTTCTGTCAACAAGGTTGGGGAAGGTGGATTCGGCTCTGTTTACAAGGGTCGGCTACA AGATGGTTCCATGGTGGCTGTGAAGGTTCTTTCACTAGAGAGTGAATCGATGCGCGGGGAGAGACAGTTCGTTTCTGAATTAGCCGCGCTTTCCAACCTC AGGCATGAAAATCTGGTCACCCTCCAAGGTTGTTGTGTTGATGGAGCGGATAGGTATTTGGTGTATCAGTATATGGAGAACAACAGTCTTGCACATAAGC TACTTGGAAATGATAAGAACAGGATGAAATTCAGCTGGGAAGCAAGGCGAAACGTTTCGATCGGGGTTTCTCGTGGAATTGCTTATCTTCACGAAGAGGT TAGCCCCCATGTGTTGCACAGAGACATTAAAGCCAGCAATATACTTCTGGATGAGAATTTCACACCCAAAGTTTCGGATTTCGGTCTCTCTCGAATTCTG AGAGAGAACAGTTCTCATATCAGTACAAGAGTCGCCGGAACATTGGGTTATCTTGCTCCGGAATATGCAGTCAGCGGCCACCTGACGCGAAAATCAGACG TTTATAGCTTTGGGGTGTTGCTCATGGAGATTATAAGTGGTAGATCAGCTGTAGATTTTGATGTAGAGCTCGGAGAGTATTACCTGGTTCAAAAGGCGTG GAGCAATTACAAGATAAACAACCTTCTTCAGATAGTGGATTCTGCTCTGAATATGAACTTCCCAGAAGAAGAAGCTCTAAGGTTCATGAAGGTCAGCCTT CTCTGTGTGCAAAAAACTGCAAAGCGCAGGCCAAAGATGTCAACCGTGGTTGAAATGTTGAACAATGAAATCGAAATGGAAAGCTATGAGATTTCTGAAC CTGGTTACCTCTCTGATCTGATGGGAATTAGATTGCACAGAAGGTACACATCCGAAACAAGTTCCTCAAAGAGCTCAACCAGAACCAGCATGTGA
AA sequence Show only first row Show all	>Lus10019933 pacid=23163949 polypeptide=Lus10019933 locus=Lus10019933.g ID=Lus10019933.BGIv1.0 annot-version=v1.0 MKVKLCGSTCFVSPELKPITAITTGEETSGNLRIFTQNELKRATQSFSSVNKVGEGGFGSVYKGRLQDGSMVAVKVLSLESESMRGERQFVSELAALSNL RHENLVTLQGCCVDGADRYLVYQYMENNSLAHKLLGNDKNRMKFSWEARRNVSIGVSRGIAYLHEEVSPHVLHRDIKASNILLDENFTPKVSDFGLSRIL RENSSHISTRVAGTLGYLAPEYAVSGHLTRKSDVYSFGVLLMEIISGRSAVDFDVELGEYYLVQKAWSNYKINNLLQIVDSALNMNFPEEEALRFMKVSL LCVQKTAKRRPKMSTVVEMLNNEIEMESYEISEPGYLSDLMGIRLHRRYTSETSSSKSSTRTSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16670			Protein kinase superfamily pro...		Lus10019933 [exp]	0	1
AT1G03290			unknown protein		Lus10012381 [exp]	7.7	0.8610
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	10.4	0.8626
AT4G38260			Protein of unknown function (D...		Lus10012253 [exp]	10.8	0.8742
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	12.0	0.9029
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	16.3	0.8944
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	17.2	0.8765
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	17.4	0.8987
AT1G09050			unknown protein		Lus10037506 [exp]	19.0	0.8780
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	22.3	0.8680
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	23.5	0.8771

Compare expression of checked genes

Lus10019933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.