Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60670 309 / 1e-109 Ribosomal protein L11 family protein (.1) AT2G37190 301 / 1e-106 Ribosomal protein L11 family protein (.1) AT3G53430 301 / 2e-106 Ribosomal protein L11 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023186 [exp] 328 / 3e-117 AT5G60670 309 / 1e-109 Ribosomal protein L11 family protein (.1) Lus10026506 [exp] 328 / 3e-117 AT5G60670 309 / 1e-109 Ribosomal protein L11 family protein (.1) Lus10041308 [exp] 320 / 7e-114 AT5G60670 305 / 6e-108 Ribosomal protein L11 family protein (.1) Lus10037402 [exp] 315 / 4e-112 AT5G60670 300 / 4e-106 Ribosomal protein L11 family protein (.1) Lus10015086 [exp] 142 / 1e-44 AT3G53430 134 / 5e-42 Ribosomal protein L11 family protein (.1) Lus10015085 [exp] 102 / 2e-29 AT5G60670 95 / 4e-27 Ribosomal protein L11 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145506 [exp] 311 / 2e-110 AT2G37190 299 / 1e-105 Ribosomal protein L11 family protein (.1) Potri.018G145504 [exp] 311 / 2e-110 AT2G37190 299 / 1e-105 Ribosomal protein L11 family protein (.1) Potri.018G146600 [exp] 311 / 2e-110 AT2G37190 299 / 1e-105 Ribosomal protein L11 family protein (.1) Potri.018G145200 [exp] 311 / 2e-110 AT2G37190 299 / 1e-105 Ribosomal protein L11 family protein (.1) Potri.006G077200 [exp] 308 / 2e-109 AT2G37190 295 / 7e-104 Ribosomal protein L11 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03946 [flax] [poplar] Ribosomal_L11_N Ribosomal protein L11, N-terminal domain PF00298 [flax] [poplar] Ribosomal_L11 Ribosomal protein L11, RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10019935 pacid=23164081 polypeptide=Lus10019935 locus=Lus10019935.g ID=Lus10019935.BGIv1.0 annot-version=v1.0 ATGCCGCCGAAGTTCGATCCATCTCAGGTAGTGGATGTGTTCGTACGCGTGACCGGCGGCGAGGTCGGAGCTGCTTCATCTCTGGCTCCCAAGATCGGTC CCCTGGGTCTCTCCCCGAAGAAGATTGGAGAAGACATCGCCAAGGAGACCAGCAAGGACTGGAAGGGCTTGCGTGTCACCGTCAAGCTCACCGTCCAGAA CCGTCAGGCGAAGGTAACGGTTGTGCCGTCCGCTGCTGCTCTGGTCATCAAGGCCTTGAAGGAGCCCGAGCGCGACAGGAAGAAGACCAAGAACATCAAG CATAACGGGAACATCTCGCTTGATGACGTGATCGAGATTGCTAAGGTGATGAAGCCGCGATCGATGGCCAAGGAGTTGAGTGGAACTGTGAAGGAGATTC TCGGTACCTGCGTCTCCGTAGGGTGTACCGTCGATGGGAAGGACCCGAAGGACCTCCAGGAGGAGATCAACGACGGTGATGTTGAAATCCCCTCCGAGTA A
AA sequence Show only first row Show all	>Lus10019935 pacid=23164081 polypeptide=Lus10019935 locus=Lus10019935.g ID=Lus10019935.BGIv1.0 annot-version=v1.0 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETSKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIK HNGNISLDDVIEIAKVMKPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINDGDVEIPSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60670			Ribosomal protein L11 family p...		Lus10019935 [exp]	0	1
AT5G60670			Ribosomal protein L11 family p...		Lus10026506 [exp]	1.0	0.9674
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10036855 [exp]	2.0	0.9520
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	2.0	0.9416
AT1G07930			GTP binding Elongation factor ...		Lus10015070 [exp]	2.2	0.9378
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10026698 [exp]	2.4	0.9467
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10031970 [exp]	3.5	0.8914
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10024161 [exp]	7.4	0.8660
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10006374 [exp]	7.5	0.8716
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	9.2	0.8279
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	10.9	0.8905

Compare expression of checked genes

Lus10019935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.