Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) AT3G45210 90 / 3e-23 Protein of unknown function, DUF584 (.1) AT2G28400 90 / 5e-23 Protein of unknown function, DUF584 (.1) AT5G60680 88 / 2e-22 Protein of unknown function, DUF584 (.1) AT1G61930 72 / 9e-16 Protein of unknown function, DUF584 (.1) AT1G11700 70 / 5e-15 Protein of unknown function, DUF584 (.1) AT4G04630 69 / 8e-15 Protein of unknown function, DUF584 (.1) AT4G21930 65 / 2e-13 Protein of unknown function, DUF584 (.1) AT4G21970 64 / 5e-13 Protein of unknown function, DUF584 (.1) AT3G15040 61 / 2e-11 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026507 [exp] 327 / 3e-114 AT5G03230 97 / 1e-24 Protein of unknown function, DUF584 (.1) Lus10015087 [exp] 194 / 3e-64 AT5G03230 87 / 6e-22 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 110 / 3e-31 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 109 / 3e-30 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 84 / 9e-21 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 81 / 4e-20 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 81 / 4e-19 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 79 / 2e-18 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10021309 [exp] 67 / 7e-14 AT3G15040 99 / 2e-25 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G089900 [exp] 126 / 3e-37 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 123 / 6e-36 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 95 / 7e-25 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 90 / 9e-23 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 79 / 1e-18 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 79 / 2e-18 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 75 / 8e-17 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 74 / 1e-16 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 65 / 5e-13 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 55 / 5e-10 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10019936 pacid=23164009 polypeptide=Lus10019936 locus=Lus10019936.g ID=Lus10019936.BGIv1.0 annot-version=v1.0 ATGGCTAGGTCAGGGGATTTCTTCCGCGCCAACATTTTCTCCACCGGCACCGAGGCAGGGAATCCGGACGGAGTTTTTGAATTCGACGAGTCCGACGTCG TCTGGAGCGGCGACTCCGCCAATAATTACCGGTCCAAGTCCAAGGCCAATAGGAGATCGCCAGCCGCCGGGATAAGATCAACGGCGATGAGCATTCCGCA GGTGCCGACGAGTGCGTCGCTTCCGGTGAACATACCGGACTGGTCCAAGATTTACAAAGAGGATAGGTACGAAGAGCAGCGAAGGCGGAGGGCTGATATC AGTTTGAGCGAGTTAGGCGATCATCTTGAAGACGACAGCGATTGCGAGGAGGAGTGGTCCGGCGGCGGCGTTGGAGATTGGGAGGACAGAGTTCCGCCGC ATGAGTATTTGGCGCGGCGGAGAGGAGCGTCGCTGTCTGTTCACGAAGGCGTAGGGAGGACTCTGAAAGGGAGGGATTTACGGCAGGTGAGGAACGCGAT TTGGAAGAAAGTCGGGTTTGAAGATTAA
AA sequence Show only first row Show all	>Lus10019936 pacid=23164009 polypeptide=Lus10019936 locus=Lus10019936.g ID=Lus10019936.BGIv1.0 annot-version=v1.0 MARSGDFFRANIFSTGTEAGNPDGVFEFDESDVVWSGDSANNYRSKSKANRRSPAAGIRSTAMSIPQVPTSASLPVNIPDWSKIYKEDRYEEQRRRRADI SLSELGDHLEDDSDCEEEWSGGGVGDWEDRVPPHEYLARRRGASLSVHEGVGRTLKGRDLRQVRNAIWKKVGFED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03230			Protein of unknown function, D...		Lus10019936 [exp]	0	1
AT2G38000			chaperone protein dnaJ-related...		Lus10021120 [exp]	2.0	0.7814
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	4.9	0.7349
					Lus10018551 [exp]	20.6	0.7083
AT4G25030			unknown protein		Lus10033276 [exp]	25.1	0.7170
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	29.3	0.6775
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10005058 [exp]	32.0	0.6251
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	37.3	0.6834
AT5G19860			Protein of unknown function, D...		Lus10039187 [exp]	40.8	0.6886
AT3G07350			Protein of unknown function (D...		Lus10003174 [exp]	45.3	0.7104
AT4G17250			unknown protein		Lus10000731 [exp]	55.3	0.6775

Compare expression of checked genes

Lus10019936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.