Plant FIBer expression Database

Lus10019937 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37195 81 / 7e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026508
[exp]
162 / 5e-52 AT2G37195 123 / 3e-37 unknown protein
Lus10002229
[exp]
154 / 5e-49 AT2G37195 132 / 1e-40 unknown protein
Lus10023187
[exp]
154 / 3e-48 AT2G37195 129 / 5e-39 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G090000
[exp]
146 / 1e-45 AT2G37195 132 / 8e-41 unknown protein
Potri.006G127800
[exp]
145 / 2e-45 AT2G37195 134 / 1e-41 unknown protein
PFAM info
Representative CDS sequence
>Lus10019937 pacid=23164001 polypeptide=Lus10019937 locus=Lus10019937.g ID=Lus10019937.BGIv1.0 annot-version=v1.0
ATGGCCGGCGAAAGAAAGAAGATTTTGGTGTGTCTCGTCGCGGCAATGCTTCTGGGGACTGCAGTTTACTTCAGGCTTTGGTCCATTGACTACGATATTT
CCTCCGACGACACTGACCTCATAAGAAGACAATTCGACTTGGCCAATCGAGAAGCTATGGATGAATCCGCGGAGTGGAGGATGAAGTATGATGAGGAGGC
AGAGAGAGCAGCCAAGTGTGACAAGGAAATCATAGAGATCAAGCAGAAGGTGGACGATGCTTCCAGCATTAACCAACAGTTGGTGGTGCTACAGAAGGTG
AGTTTGTTTCCATTGGAGAGCAGTCTTGTTCCAGTTTCAGTTAAAATTCGGCATGTGATTTCAGCTCCCCATTTTGTTACAGGAAAACATGGCATTGATA
GGAAGAATGGAAGCACTGAAAAAGGAGCTGGCAGTTGCCAAGTCAAAGTGTCGCTCGAGATAGTCTATTTTCAGCAGCATCACAATATTGTGTAA
AA sequence
>Lus10019937 pacid=23164001 polypeptide=Lus10019937 locus=Lus10019937.g ID=Lus10019937.BGIv1.0 annot-version=v1.0
MAGERKKILVCLVAAMLLGTAVYFRLWSIDYDISSDDTDLIRRQFDLANREAMDESAEWRMKYDEEAERAAKCDKEIIEIKQKVDDASSINQQLVVLQKV
SLFPLESSLVPVSVKIRHVISAPHFVTGKHGIDRKNGSTEKGAGSCQVKVSLEIVYFQQHHNIV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37195 unknown protein Lus10019937
[exp]
0 1
AT1G04040 HAD superfamily, subfamily III... Lus10023731
[exp]
1.0 0.9253
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Lus10002272
[exp]
1.7 0.9148
AT1G20050 HYD1 HYDRA1, C-8,7 sterol isomerase... Lus10015386
[exp]
2.0 0.9196
AT4G17170 ATRAB-B1B, AT-R... ARABIDOPSIS RAB GTPASE HOMOLOG... Lus10025184
[exp]
5.9 0.8768
AT5G38790 unknown protein Lus10034101
[exp]
6.0 0.8655
AT4G30400 RING/U-box superfamily protein... Lus10019973
[exp]
7.7 0.8631
AT5G20110 Dynein light chain type 1 fami... Lus10030069
[exp]
7.7 0.8704
AT3G18200 nodulin MtN21 /EamA-like trans... Lus10027251
[exp]
14.5 0.8827
AT5G14020 Endosomal targeting BRO1-like ... Lus10035167
[exp]
14.9 0.8769
AT5G47950 HXXXD-type acyl-transferase fa... Lus10002893
[exp]
17.2 0.8743

Lus10019937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.