Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026509 [exp] 112 / 9e-34 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127750 [exp] 37 / 0.0003 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019938 pacid=23164088 polypeptide=Lus10019938 locus=Lus10019938.g ID=Lus10019938.BGIv1.0 annot-version=v1.0 ATGTCGAAAATCGACGATGGCGACAGAAGACTGTATCAATGCGCAAGAAAGTACGACCAGATCGTGAACCAAGAAACTGAAAAGTTCTCTTCTTTCTTCT TTCGGTTTGACGAGCTGGTTGAGATGATGACTGCCAGAGCCAGGCCGCCCAAGCGGCGCAGAATCTCATCATCGAGTTCCAAAGAAACTAACAAGGCAGC TGTGGCCGAGATATCCCCGTGTGAAGATGATAATGACGGCAAAGTATTTGTGGAGACCATAACCAAGTTTCTCCAGGAACTAAGTGATGATCAGCCTGCT GCTGAAACGGATTCCTCATCTGCCTCCAGAGATTCTCCAGAGTAG
AA sequence Show only first row Show all	>Lus10019938 pacid=23164088 polypeptide=Lus10019938 locus=Lus10019938.g ID=Lus10019938.BGIv1.0 annot-version=v1.0 MSKIDDGDRRLYQCARKYDQIVNQETEKFSSFFFRFDELVEMMTARARPPKRRRISSSSSKETNKAAVAEISPCEDDNDGKVFVETITKFLQELSDDQPA AETDSSSASRDSPE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019938 [exp]	0	1
AT3G05260			NAD(P)-binding Rossmann-fold s...		Lus10021931 [exp]	1.7	0.7300
					Lus10003442 [exp]	3.5	0.7159
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007249 [exp]	5.1	0.7657
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	7.5	0.7217
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	15.7	0.7103
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	17.9	0.6902
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10030442 [exp]	18.7	0.6760
					Lus10032314 [exp]	19.2	0.6978
					Lus10005511 [exp]	21.2	0.6233
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	22.4	0.6892

Compare expression of checked genes

Lus10019938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.