Plant FIBer expression Database

Lus10019939 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42300 141 / 4e-46 UBL5 ubiquitin-like protein 5 (.1)
AT3G45180 139 / 5e-45 Ubiquitin-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023188
[exp]
144 / 2e-47 AT5G42300 140 / 1e-45 ubiquitin-like protein 5 (.1)
Lus10002228
[exp]
144 / 2e-47 AT5G42300 140 / 1e-45 ubiquitin-like protein 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G223100
[exp]
144 / 3e-47 AT5G42300 144 / 2e-47 ubiquitin-like protein 5 (.1)
Potri.008G039100
[exp]
142 / 2e-46 AT5G42300 147 / 2e-48 ubiquitin-like protein 5 (.1)
Potri.004G211600
[exp]
142 / 3e-46 AT3G45180 143 / 1e-46 Ubiquitin-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF00240 ubiquitin Ubiquitin family
Representative CDS sequence
>Lus10019939 pacid=23163965 polypeptide=Lus10019939 locus=Lus10019939.g ID=Lus10019939.BGIv1.0 annot-version=v1.0
ATGTTGGAAGTAGTGTTGAACGATAGGCTGGGGAAGAAGGTGAAGGTGAAGTGCAACGAGGATGACACAATCGGCGACCTGAAGAAACTGGTGGCGGCGC
AGACCGGAACGAGGGCGGAGAAGATAAGGATTCAAAAGTGGTACACCATCTACAAGGACCACATCACCCTCGCCGACTACGAGATTCACGACGGGATGGG
CCTCGAGCTTTACTACAATTGA
AA sequence
>Lus10019939 pacid=23163965 polypeptide=Lus10019939 locus=Lus10019939.g ID=Lus10019939.BGIv1.0 annot-version=v1.0
MLEVVLNDRLGKKVKVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLADYEIHDGMGLELYYN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42300 UBL5 ubiquitin-like protein 5 (.1) Lus10019939
[exp]
0 1
AT3G32930 unknown protein Lus10013750
[exp]
3.5 0.6856
AT2G21090 Pentatricopeptide repeat (PPR-... Lus10027836
[exp]
5.5 0.6061
AT2G01770 ATVIT1, VIT1 vacuolar iron transporter 1 (.... Lus10034583
[exp]
10.9 0.7093
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Lus10013785
[exp]
12.8 0.6830
AT4G10265 Wound-responsive family protei... Lus10039760
[exp]
15.9 0.6513
AT3G12260 LYR family of Fe/S cluster bio... Lus10008661
[exp]
17.3 0.6536
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10043137
[exp]
17.3 0.6453
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Lus10038868
[exp]
20.4 0.6521
AT5G27440 unknown protein Lus10041604
[exp]
25.1 0.6583
AT4G23330 unknown protein Lus10024630
[exp]
36.1 0.6112

Lus10019939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.