Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30080 600 / 0 ARF ARF16 auxin response factor 16 (.1) AT2G28350 586 / 0 ARF ARF10 auxin response factor 10 (.1) AT1G77850 314 / 1e-98 ARF ARF17 auxin response factor 17 (.1) AT1G19850 221 / 7e-62 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT2G33860 211 / 5e-60 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G59750 213 / 6e-60 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 213 / 2e-59 ARF ARF4 auxin response factor 4 (.1) AT5G62000 210 / 6e-58 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT2G46530 197 / 9e-55 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 194 / 6e-54 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026510 [exp] 1158 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 543 / 0 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 538 / 0 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 530 / 0 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10024754 [exp] 352 / 4e-113 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10024753 [exp] 350 / 2e-112 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 340 / 9e-109 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10016091 [exp] 260 / 1e-81 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10016090 [exp] 238 / 1e-72 AT2G28350 266 / 3e-83 auxin response factor 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127500 [exp] 736 / 0 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 719 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 717 / 0 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.010G223200 [exp] 713 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 676 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.009G014800 [exp] 666 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.002G089900 [exp] 357 / 2e-115 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G236700 [exp] 221 / 2e-61 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.009G011800 [exp] 216 / 9e-61 AT5G60450 830 / 0.0 auxin response factor 4 (.1) Potri.011G059300 [exp] 215 / 2e-60 AT2G33860 566 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10019940 pacid=23164058 polypeptide=Lus10019940 locus=Lus10019940.g ID=Lus10019940.BGIv1.0 annot-version=v1.0 ATGCCGCCGGTGAACTCCAAGGTGTTTTACTTCCCTCAGGGACACGCTGAGCATTCCACTGGCCCCGTCAATTTCAGAACCACCCTCCCTAATCTCCGCC CTTACATCCTCTCCAGAATCTCCGCAATCAAGTTCATGGCTGATCCGGATACTGATGAGGTCTACGCCAAGATGAAGCTAGCTCCGGTCACGTCCTCCGG CGACAGCTCTGATTTCGACGATGACCAGGGATTGCTGAACGGGGAAGGACCGGAGAACAACAACAAGCAAGCACCGACTTCATTCGCCAAGACACTGACG CAGTCAGACGCTAACAACGGCGGTGGATTCTCGGTACCTCGGTACTGCGCCGAGACAATCTTCCCAAGGCTGGATTACACTGCGGATCCTCCAGTGCAAA CCATTCTTGCCAAGGATGTTCATGGGGAGACATGGAAGTTTCGGCACATTTACAGAGGCACACCGAGAAGGCATCTTTTGACTACCGGGTGGAGTGCATT TGTGAATCATAAGAAACTCGTTGCTGGGGATTCGATTGTGTTTCTTAGAGCCGAGAATGGAGATCTGTGCGTTGGGATTCGGAGAGCTAAGAGAGGAATC GGTGGTGGACCGGAGTCTTCTTGGAACCCTGCTGGTGGGAATAACTATGGTGGGTTTAGTTCATTTTTGAGGGAGGAAGAGAATAAACTCTTAAGAAATG GCAATAATGGGAACAATGGAAGCAGCAATTTGATGGGGAGAGGGAAAGTGAGGCCTGATTCTGTGATTGAAGCTGCAACTCGAGCTGCAAATGGGCAGCC TTTTGAAGTTGTTTACTATCCTAGAGCTAGTGCTCCAGAGTTTTGTGTTAAGGCTTCTTTGGTGAAATCAGCATTGCAGATCCGTTGGTGTTCTGGGATG AGATTCAAGATGGCTTTCGAGACTGAGGATTCTTCGAGGATCAGCTGGTTCATGGGTACAATCTCCTCCGTTCATTTTGCCGACCCTCTTCACTGGCCGG ATTCCCCTTGGAGGCTTCTGCAGGTGGCATGGGATGAACCAGACTTGCTGCAGAATGTGAAGAGGGTAAGCCCTTGGCTAGTGGAATTGGTATCAAACAT GCCGGCGATTCATCTCTCGCCATTCTCACCTCCGAGGAAGAAATTGAGATTGCCGCACCATCCAGATTTCCCATTGGAAGGGCAGTTTCCGATGCCGATG TTCACCGGAAATCTCATCGGACATCATCACAGCAGCCCCTTCGGTTGCCTAGCGGACCACAACACTACTACTCCTGCTGGCATGCAGGGAGCCAGGCATG CTCATTATGGTCTACCTTTATCAGATCTCCAACACTTCAACAATAAGATCCAGACGATGGGTCATCTTTTCCCGCCTTTAGTTCAACAACAGCAGCATAT GATCGTTCCGAAGCCGAGCATGAGCAGTGAGAGCATTTCATGCTTGCTGACGATGGGGAACTCTACTAACCAGTCGACGACTCCAAAGGACAAACCAAAT GAAGCAAAGGCAGTACACCAATTCGTACTGTTCGGTAAACCCATTCTAACCGAGCAACAAATCTCTCTTAGCAGCTCTGGCGATACAGTTTCTCCGAATC ACAATCGAAACAATTCATCCGATGGTCCAGAGCCATCGCCGGCACGTGAAGGCTCTAACCATCTGGAAATTGAGCAAGCTTCCCATCAATGCAGAGTCTT TTTCGAATCGGACGAGGTGGGTCACCCTCTCGATCTTTCGTCGATGAGATCTTACGACGAACTCCATAGAAAGATAGCAGAGATGTTCCAAGTGGAAAAT CCAGAGACCCTACACAACATTCTGTACGGGGATTTAGGCGGTATTGTTAGGCACATTGGAGATGAGCCATACTGCGACTTTGCAAGAAACGCGAGGAGGT TGACGGTCTTGTCAGACTCGAGCAGTGACAATGTAGGAAGGACGAGGCAAAAGAAGTAA
AA sequence Show only first row Show all	>Lus10019940 pacid=23164058 polypeptide=Lus10019940 locus=Lus10019940.g ID=Lus10019940.BGIv1.0 annot-version=v1.0 MPPVNSKVFYFPQGHAEHSTGPVNFRTTLPNLRPYILSRISAIKFMADPDTDEVYAKMKLAPVTSSGDSSDFDDDQGLLNGEGPENNNKQAPTSFAKTLT QSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSAFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGI GGGPESSWNPAGGNNYGGFSSFLREEENKLLRNGNNGNNGSSNLMGRGKVRPDSVIEAATRAANGQPFEVVYYPRASAPEFCVKASLVKSALQIRWCSGM RFKMAFETEDSSRISWFMGTISSVHFADPLHWPDSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPHHPDFPLEGQFPMPM FTGNLIGHHHSSPFGCLADHNTTTPAGMQGARHAHYGLPLSDLQHFNNKIQTMGHLFPPLVQQQQHMIVPKPSMSSESISCLLTMGNSTNQSTTPKDKPN EAKAVHQFVLFGKPILTEQQISLSSSGDTVSPNHNRNNSSDGPEPSPAREGSNHLEIEQASHQCRVFFESDEVGHPLDLSSMRSYDELHRKIAEMFQVEN PETLHNILYGDLGGIVRHIGDEPYCDFARNARRLTVLSDSSSDNVGRTRQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	0	1
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	1.7	0.8298
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	2.8	0.7765
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10021710 [exp]	4.6	0.8046
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	6.0	0.7980
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	6.6	0.8195
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	9.6	0.7373
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	9.8	0.7352
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	10.1	0.7864
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	13.8	0.7868
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	14.5	0.7403

Compare expression of checked genes

Lus10019940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.