Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30300 149 / 5e-39 Major facilitator superfamily protein (.1) AT4G19450 121 / 3e-29 Major facilitator superfamily protein (.1) AT5G45275 121 / 4e-29 Major facilitator superfamily protein (.1) AT1G31470 102 / 7e-23 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT3G01630 102 / 7e-23 Major facilitator superfamily protein (.1) AT4G34950 79 / 3e-15 Major facilitator superfamily protein (.1) AT2G16660 76 / 2e-14 Major facilitator superfamily protein (.1) AT2G28120 67 / 2e-11 Major facilitator superfamily protein (.1) AT1G80530 64 / 2e-10 Major facilitator superfamily protein (.1) AT1G74780 54 / 2e-07 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015469 [exp] 796 / 0 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10026422 [exp] 186 / 6e-52 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10015470 [exp] 184 / 3e-51 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10034738 [exp] 132 / 6e-33 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10033271 [exp] 123 / 2e-30 AT4G19450 516 / 0.0 Major facilitator superfamily protein (.1) Lus10042234 [exp] 104 / 3e-26 AT2G30300 116 / 3e-31 Major facilitator superfamily protein (.1) Lus10033270 [exp] 90 / 4e-21 AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) Lus10030111 [exp] 74 / 3e-14 AT1G80530 259 / 5e-83 Major facilitator superfamily protein (.1) Lus10001678 [exp] 75 / 7e-14 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126700 [exp] 350 / 9e-115 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G154000 [exp] 345 / 2e-113 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.001G128200 [exp] 128 / 2e-31 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 125 / 1e-30 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 119 / 2e-28 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 87 / 6e-18 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 82 / 3e-16 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 81 / 4e-16 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 72 / 3e-13 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 66 / 3e-11 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10019941 pacid=23156257 polypeptide=Lus10019941 locus=Lus10019941.g ID=Lus10019941.BGIv1.0 annot-version=v1.0 ATGAAGATCGCCAAAAATAACACCAAAGCCATTGGATCATCATCAGCTGCGCCGTGGCTGAGCCTAGTGGCAGGGGGATGGGTGGGGGCGGGGGGGCGGC GGTACACAAAAACACGCAGTGCGTCGTCACATGAGCTCAAGCAGTACCTCTCCCTCTCCCAGTTCCAGCTCAACGACCTCGCCTTCGCCTCCGACGCCGG CAAGCTCTTCGGCTGGATCTCCGGCGTAGCGGCTGATCACTTGCCGCTCTGGCTCGTCCTTGTCATCGGCTCGTCTCTCGGCTTCGTTAGCTACGGCTTG CAGTTCCTCTCGCTAAACGGTGCCGTTGCGTCGTCTAGTAATTCCTTGCCATCCAAGTGGTTTCGGTCTTATCCGGTGATATTCATCCTAAACACCGTCG CCGGGAACAGTATCTGTTGGGTCAACACGGTGTGTTACATGGTGATCAGCCAGAGCTTTCCCTTAGACCAACAGGTAGCGGTGGGGCTCACAACAAGCTA CCAGGGACTGACCACCAAGATCTACGCAGTGGTCGTCAAAGAGCTTTTCTTGTCGCCATCGTCCTCCGCGGTTAAGTCGTACCTCCTCCTCGACTCCCTC TTCCCTCTCATAGTCTCGGCACTCGCCCTCCTTCTAATGATCAACCACTTCTCCTCTTCCTCCTCCTCCTCGGACTTAGCATTAGGAGGAGGGAAACGGC ACCGTGTAGGGTTCATGGGACTATACGTGATCACCACGGTAACGGGAGCGTGCGCCGTGATGAGTAGCTTGAGCGGCAAGGTATACGATCTTTTCCCGTA TTGCGGGATGGTGTTCACATTGGGGCTTCTCCTGGCCCCACTGGTGATCCCAGCTGGAATTTTTATTATTAAAAAATACTGCCAGGTGGAGTATGGTACT AGTACCGATGAGGAGAGAGATAGTAGTGGTACCATTACCGAGGAGACTGCGGCGGCGGCGGAGAAGGAGCTGGTGAAAGAGGAGGCTGGAGTGAAGATAT CGGAGTCGCGTGGGTGTTACGACACGACGTCGTTGGTTTCATTGTCGTCGTCGTTCACTTTCTTCGGCCGACTCCTCCCTTCGTTTCTCGACTACTTCTT CTCCAGGAGCAAGTATCTACCAGCAAGGACAGCGATCCTAATGATGCTAATGGCACCAATAACAGGATCACTAGTCCTCCTCCTCAACAACTCCCACACA GCGCTCATCGTTAGCACAGCAGTCATAGGGATATGCACGGGCGCCATCACTTCCATCGCAGTCTCGGTAACATCGGAGCTCTTCGGTTCCAAAAACTTCG CAGTGAACCACAACATAGTGGTGGCCAACATCCCCGTGGGTTCGTTCTGCTTCGGATACCTGGCCGCTCAGGTTTACCAGAGCGAGACACTGCCCGGACA GTCGAAATGCATGGGTGCGGAGTGTTACCACCGGACTTTCGTGGTTTGGGCTCAGCTTTCTGGGTTCGGTCTCTTGCTTGCTTTCCTCTTGTATAATCGT ACTAAACAGTTTTACTCCAGCAGATTCGCAGCGCTCAATACTTTTTTGTATCGTTAG
AA sequence Show only first row Show all	>Lus10019941 pacid=23156257 polypeptide=Lus10019941 locus=Lus10019941.g ID=Lus10019941.BGIv1.0 annot-version=v1.0 MKIAKNNTKAIGSSSAAPWLSLVAGGWVGAGGRRYTKTRSASSHELKQYLSLSQFQLNDLAFASDAGKLFGWISGVAADHLPLWLVLVIGSSLGFVSYGL QFLSLNGAVASSSNSLPSKWFRSYPVIFILNTVAGNSICWVNTVCYMVISQSFPLDQQVAVGLTTSYQGLTTKIYAVVVKELFLSPSSSAVKSYLLLDSL FPLIVSALALLLMINHFSSSSSSSDLALGGGKRHRVGFMGLYVITTVTGACAVMSSLSGKVYDLFPYCGMVFTLGLLLAPLVIPAGIFIIKKYCQVEYGT STDEERDSSGTITEETAAAAEKELVKEEAGVKISESRGCYDTTSLVSLSSSFTFFGRLLPSFLDYFFSRSKYLPARTAILMMLMAPITGSLVLLLNNSHT ALIVSTAVIGICTGAITSIAVSVTSELFGSKNFAVNHNIVVANIPVGSFCFGYLAAQVYQSETLPGQSKCMGAECYHRTFVVWAQLSGFGLLLAFLLYNR TKQFYSSRFAALNTFLYR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30300			Major facilitator superfamily ...		Lus10019941 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	5.3	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	7.5	1.0000
					Lus10011832 [exp]	8.3	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	10.6	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10032879 [exp]	11.8	1.0000
					Lus10007184 [exp]	13.0	1.0000
					Lus10007226 [exp]	14.0	1.0000
AT2G28605			Photosystem II reaction center...		Lus10009159 [exp]	15.0	1.0000
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018414 [exp]	15.9	1.0000
					Lus10034743 [exp]	16.7	1.0000

Compare expression of checked genes

Lus10019941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.