Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36370 797 / 0 SHM7 serine hydroxymethyltransferase 7 (.1) AT1G22020 777 / 0 SHM6 serine hydroxymethyltransferase 6 (.1) AT4G13930 605 / 0 SHM4 serine hydroxymethyltransferase 4 (.1) AT4G13890 592 / 0 SHM5, EDA36, EDA37 SERINE HYDROXYMETHYLTRANSFERASE 5, EMBRYO SAC DEVELOPMENT ARREST 36, EMBRYO SAC DEVELOPMENT ARREST 37, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37930 503 / 7e-174 SHMT1, STM, SHM1 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) AT5G26780 484 / 1e-166 SHM2 serine hydroxymethyltransferase 2 (.1.2.3) AT4G32520 470 / 9e-161 AtSHMT3, SHM3 serine hydroxymethyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015471 [exp] 1160 / 0 AT1G36370 819 / 0.0 serine hydroxymethyltransferase 7 (.1) Lus10043157 [exp] 620 / 0 AT4G13930 865 / 0.0 serine hydroxymethyltransferase 4 (.1) Lus10022557 [exp] 620 / 0 AT4G13930 874 / 0.0 serine hydroxymethyltransferase 4 (.1) Lus10028218 [exp] 483 / 7e-166 AT5G26780 903 / 0.0 serine hydroxymethyltransferase 2 (.1.2.3) Lus10039629 [exp] 478 / 4e-164 AT4G37930 933 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) Lus10029559 [exp] 475 / 4e-163 AT4G37930 900 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) Lus10042923 [exp] 474 / 1e-162 AT4G37930 881 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) Lus10022391 [exp] 466 / 4e-159 AT4G32520 828 / 0.0 serine hydroxymethyltransferase 3 (.1.2) Lus10005916 [exp] 466 / 4e-159 AT4G32520 823 / 0.0 serine hydroxymethyltransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G212000 [exp] 874 / 0 AT1G36370 798 / 0.0 serine hydroxymethyltransferase 7 (.1) Potri.002G090200 [exp] 764 / 0 AT1G36370 809 / 0.0 serine hydroxymethyltransferase 7 (.1) Potri.005G170800 [exp] 754 / 0 AT1G36370 837 / 0.0 serine hydroxymethyltransferase 7 (.1) Potri.001G320400 [exp] 617 / 0 AT4G13930 874 / 0.0 serine hydroxymethyltransferase 4 (.1) Potri.017G059300 [exp] 615 / 0 AT4G13930 868 / 0.0 serine hydroxymethyltransferase 4 (.1) Potri.002G109200 [exp] 490 / 7e-169 AT5G26780 904 / 0.0 serine hydroxymethyltransferase 2 (.1.2.3) Potri.006G232300 [exp] 485 / 9e-167 AT4G32520 869 / 0.0 serine hydroxymethyltransferase 3 (.1.2) Potri.008G002900 [exp] 476 / 3e-163 AT4G37930 933 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1) Potri.010G254700 [exp] 474 / 1e-162 AT4G37930 918 / 0.0 SERINE HYDROXYMETHYLTRANSFERASE 1, serine transhydroxymethyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00464 [flax] [poplar] SHMT Serine hydroxymethyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019942 pacid=23156209 polypeptide=Lus10019942 locus=Lus10019942.g ID=Lus10019942.BGIv1.0 annot-version=v1.0 ATGGAATCCAACTTGTCTCTCGGCTTGGTTTCAACATCCACCCCCGCCGCATCCCCTGCTCATCGCTCTCAGATTTCCGATGATTCAATCTCTTTCCTCC GTGAAACATCCTCTTCCTCCGCTTCCGCCGCCCACAACCTCCCTCTCCGCCTGCTCGAGTCCATTACCGACAATCATTCCCGCTCCAATCATCACAAGAA CGGCGCCATAGAACTTAATCGGGAGCCCGGTGACGAGGAGGACGAGCGTGAGTTCCGGATTCTAGGTCATTCCATGTGCTTGAAACGCCGTCGCTCCGAT TGTGAGATTCAGTCCTCGGCCAAGAGGACATCTGGCGCCAATGAATCCGACGCCGAGGAGAGGCGGAATTCTGCCAAGGCTTGGGGTAACCAGCCGATCA GTGAGGCGGATCCTGAAATTTTTGAGATTATCGGTAAGGAGAAGGAGAGGCAAGTGAAAGGAATTGAGCTGATTGCATCCGAGAATTTCGTTTGTAGAGC TGTGATGGAAGCACTGGGGAGTCATTTGACTAACAAATACTCTGAAGGAATGCCTGGGGCGCGTTACTACTGTGGGAATCAATACATTGACGAGATTGAA ACCCTATGTTGCAAGCGGGCGCTAGATGCTTTCGGACTGGATCCGGAGAATTGGGGGGTTAATGTCCAGCCCTACTCTTGTACTTCTGCTAATTTCGCTG TGTATACCGGATTGTTGTTGCCTGGAGATAGGATCATGGGGCTTGACACCCCTTCTGGAGGGAATACCAGCCATGGGTGTTATATGCCGAGTGGTAGGAA AGTGTCTGCAGCTTCGATTTTCTTTGAGAGTTTGTCGTATAAGGTGAACCCGCATACTGGGTACATTGATTTCGATAAGCTGGAAGAGAGAGCACTCGAT TTCAGGCCCAAGATTCTTATCTGTGGTGGCAGCTCTTATCCGAGAGAGTGGGATTATGCGAGGTTTAGACAGATTGCGGATAAGTGTGGTTCTGTTCTTC TGTGTGACATGGCTCAAATTAGTGGTCTTGTTGCTTCTAAGGAGTGTGTCAATCCATTTGACTACTGCGACATTGTAACCTCAACAACTCACAAGAGTCT GAGAGGACCAAGGGGTGGTATAATATTCTTTAGGAAAGGTACGAAGCCAAGGAAAAGAGGGATGCTCTTAAGTCAGGGAAATGAAAATGAGCAGTATGAT TTCGAGGAAAAGATAAACTTCGCTGTATTTCCATCACTCCAAGGTGGACCTCACAATAACCATATTGCTGCTCTAGCAATTGCCTTGAAGCAAGCTGTTA CCCCCGAGTACAAGGCATATATGCATCAGGTGAAGCTAAATGCACAAGCTTTAGCCAATGCCTTGTTGAGAAGAAGATGTCGACTCGTAACTGGAGGCAC AGACAACCACTTGTTACTTTGGGATCTGAGGCCACTGGGACTAACAGGTAAAACATATGAGAAGGTCTGCGAGTTGTGCCATATTACTGTTAACAAAATC GCTATCTTCGGGGATAACGGCACCATTACTCCTGGAGGTGTAAGAATTGGTACTCCTGCAATGACATCGAGAGGTTGCCTGGAGTCTGATTTTGAGGTGA TGGCTGATTTTCTATTGAGGGTTGCACAGATTGCAAGTATGCTACAGCGGGAGCATGGGAAGTCTCCCAAGGCTTTCCTGGAAGCTCTTCAGAGCAGCAA GGACCTTGCAGAGGTTCGGAATCAAGTGGAAAGCTTTGCAACTCAGTTTTCACTGCCGGGAGTTGACGTGTGA
AA sequence Show only first row Show all	>Lus10019942 pacid=23156209 polypeptide=Lus10019942 locus=Lus10019942.g ID=Lus10019942.BGIv1.0 annot-version=v1.0 MESNLSLGLVSTSTPAASPAHRSQISDDSISFLRETSSSSASAAHNLPLRLLESITDNHSRSNHHKNGAIELNREPGDEEDEREFRILGHSMCLKRRRSD CEIQSSAKRTSGANESDAEERRNSAKAWGNQPISEADPEIFEIIGKEKERQVKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYCGNQYIDEIE TLCCKRALDAFGLDPENWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDTPSGGNTSHGCYMPSGRKVSAASIFFESLSYKVNPHTGYIDFDKLEERALD FRPKILICGGSSYPREWDYARFRQIADKCGSVLLCDMAQISGLVASKECVNPFDYCDIVTSTTHKSLRGPRGGIIFFRKGTKPRKRGMLLSQGNENEQYD FEEKINFAVFPSLQGGPHNNHIAALAIALKQAVTPEYKAYMHQVKLNAQALANALLRRRCRLVTGGTDNHLLLWDLRPLGLTGKTYEKVCELCHITVNKI AIFGDNGTITPGGVRIGTPAMTSRGCLESDFEVMADFLLRVAQIASMLQREHGKSPKAFLEALQSSKDLAEVRNQVESFATQFSLPGVDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	0	1
AT5G55340			MBOAT (membrane bound O-acyl t...		Lus10022293 [exp]	1.4	0.8733
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	1.7	0.8541
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	4.9	0.8447
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	5.0	0.8431
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	7.3	0.8319
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	7.7	0.8577
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	8.5	0.8294
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	9.5	0.8400
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	10.4	0.8114
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10027083 [exp]	12.3	0.8077

Compare expression of checked genes

Lus10019942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.