Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22030 176 / 1e-52 unknown protein AT1G77855 172 / 3e-51 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015473 [exp] 246 / 3e-81 AT1G22030 100 / 2e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090300 [exp] 203 / 3e-63 AT1G22030 360 / 2e-124 unknown protein Potri.005G170700 [exp] 196 / 3e-60 AT1G22030 358 / 9e-124 unknown protein Potri.001G211900 [exp] 195 / 6e-60 AT1G22030 291 / 2e-97 unknown protein Potri.003G018700 [exp] 162 / 3e-47 AT1G22030 266 / 2e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019943 pacid=23156238 polypeptide=Lus10019943 locus=Lus10019943.g ID=Lus10019943.BGIv1.0 annot-version=v1.0 ATGCAGGATCCTTCGCCGTCGTCGACTAACTCCGTCGACGGTTTCTACAGCTTCCTAGCGAGAGGACTCAACGACCTCGACCAAACCATCATCCACCACC ATCACCACCACCACCACCACAACAACTTGTTCCTGTCTGCTCACTTCCTTCACAAAGTCTTGTCCACTCTCCAATCTTTCCACTCCCATCTCACCTTGCT CGTTCAGAAGCTACAGCTCCCACTCCTCGGCGACAAATGGCTCGATGAGTACATGGACGAGAGCTCCCGCCTCTGGGAGGCTTGCCACATCATCAAATCC GGCGTCTCCGGGATTGAGTCCTTTTACTTGTCCGCCGTCAACCTCGCTTCCGGCGGCTTCCGTCTCCTCCCTCCTCAAGTCTCCCGCCGGGTGATAAGAG GGTGCGAGAGGCAGATAATGGGGGTGGAGGAGGACAACAGGAGCTTAGCGGAGACGAGAGTAAAAGCATTGTGTGTCCAATTCACGAGGATTGACGACTC TGATCATCATCATCACTACCAAACTGAATCCAGGATGAACGGATTCAACGGATTCACAGGAGTTCTGTTCGCCATGAGGAAAGTAACCACTCTGCTTCTC AACATTCTGTTCGGAGGCCTGGTTTACTTCTCCGGTCAGGATCAAGAATTAGTATTAGGGTACAACAACAACAACAACAATCGGAACAGCTACTTATCAG GATCGGTGAGTCTGCTGATCGGAGCGACAGCGAGGCTGAATCAACGAGTGGCGATGATGATGAATGGAGGGGGGATAATGATGAGCGAGTTTGGAGAGGT GAAGAAGGCGATGGAAGAGGTGAAACTGGAAGTGGAGAAACAGGAGGAAGAGATTCATAAAATGGAAGAGAAAGTGGAGAAGATGGAGAGGTGTTTTGGG AAGCTGAGGAGTGGGGTTGAGTCTATAATTGGTGGCCTTGATGATTTCCTGGATGATATTGTTGATTCCAGAAAGAAGCTTTTGAAGATTTGCAGCACAC ATAGGCAGTAG
AA sequence Show only first row Show all	>Lus10019943 pacid=23156238 polypeptide=Lus10019943 locus=Lus10019943.g ID=Lus10019943.BGIv1.0 annot-version=v1.0 MQDPSPSSTNSVDGFYSFLARGLNDLDQTIIHHHHHHHHHNNLFLSAHFLHKVLSTLQSFHSHLTLLVQKLQLPLLGDKWLDEYMDESSRLWEACHIIKS GVSGIESFYLSAVNLASGGFRLLPPQVSRRVIRGCERQIMGVEEDNRSLAETRVKALCVQFTRIDDSDHHHHYQTESRMNGFNGFTGVLFAMRKVTTLLL NILFGGLVYFSGQDQELVLGYNNNNNNRNSYLSGSVSLLIGATARLNQRVAMMMNGGGIMMSEFGEVKKAMEEVKLEVEKQEEEIHKMEEKVEKMERCFG KLRSGVESIIGGLDDFLDDIVDSRKKLLKICSTHRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22030			unknown protein		Lus10019943 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	2.4	0.9832
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10019479 [exp]	2.8	0.9864
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	5.0	0.9797
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	5.2	0.9827
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	6.3	0.9813
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	8.5	0.9766
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031326 [exp]	9.4	0.9624
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	11.8	0.9676
AT1G13635			DNA glycosylase superfamily pr...		Lus10036835 [exp]	12.0	0.9668
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	12.3	0.9740

Compare expression of checked genes

Lus10019943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.