Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22200 1058 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G26650 600 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 565 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 550 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 501 / 2e-167 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 485 / 5e-161 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 395 / 1e-127 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 394 / 1e-124 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 387 / 4e-122 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G57940 74 / 3e-13 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015474 [exp] 1526 / 0 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10002529 [exp] 584 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10043298 [exp] 578 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 577 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 561 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10003644 [exp] 533 / 0 AT4G22200 511 / 3e-174 potassium transport 2/3 (.1) Lus10013115 [exp] 535 / 2e-178 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 531 / 3e-177 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10028128 [exp] 514 / 1e-171 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G018800 [exp] 1170 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.018G031600 [exp] 585 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 576 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 560 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.004G132200 [exp] 556 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 439 / 4e-144 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 410 / 6e-133 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 409 / 1e-132 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.017G135400 [exp] 397 / 1e-125 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 393 / 5e-124 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019944 pacid=23156170 polypeptide=Lus10019944 locus=Lus10019944.g ID=Lus10019944.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATGACGATGAAAAGAAGAAGAAGGAGAAGGAGAAGACTGTGAAACCCCCCACTTCCATGGAAGAAGAATTACAAGATGAAAAAGAAGAAG GAGAAGGAGGAGAAGAAGAAGAAGAAAACTCGTCAATTTCACTATCAGGGTTGTCAAAGATTGTTCTTCCACCTCTTGGTTCTTCAGGGAACAATTACCA GAACCCTCAAGTCTCCAAAGGATGGATCATTTCTCCCATGGATTCTACTTACAGGTGTTGGGAAACATTTATGGTGATACTGGTTGCATACTCAGCATGG GTTTATCCATTTGAAGTAGCATTCTTGAAGTCAGCCCCAACTCCCAGTAAAAACCTTTACATCGCCGACTCAGTCGTCGACGTCTTCTTCGCCGTTGACA TCATCCTGACATTCTTCGTTGCTTACTTTGACTCTCGAACCCAGCTCCTTGTCCGGAAACCTAGAAAGATAGCCACCAGGTATCTATCGACATGGTTCAT AATGGATGTTGCTTCTACGATGCCTTTCGAGGCATTGGGTTACTTATTCACTGGGAAACAACAGTTGGGTATTTCCTTTTCGATCTTGGGTTTGCTCAGA TTCTGGCGAATCAGACGCGTTAAGCAGTTCTTCACCAGGCTTGAAAAAGACATCAGATTCAACTACTTTTGGGTCCGATGCGCCAGACTGTTGGCGGTGA CATTGTTCCTAGTGCATTCTGCTGGCTGCCTCTACTACTTGCTAGCAGACTTGTACCCGCATCAAGGGAAGACATGGGTTGGCTCTTTGATCCCAAATTA CAGGGAGACCAGCGTCTGGATGAGGTACATTGCTGCTATGTACTGGTCCATCACCACTATGACAACAGTTGGCTATGGTGACCTCCATGCTGTCAACGCC ATGGAGATGATCTTCATCATATTCTACATGCTTTTCAACCTTGGCCTCACTGCTTATATCATTGGTAACATGACCAATCTCGTCGTTGAAGGCACTCGTC GCACAATGGAATTCAGGAACAGCATTGAGGCAGCCTCGAATTTCGTGAGTAGAAACCGGCTTCCTCCGAGGCTTAAGGAGCAGATACTGGCTTACATGTG CTTAAAGTTCAAAGCTGAGAGTTTGAACCAGCACCAACTCATGGAGCAGTTACCAAAGTCCATCTGCAAGAGTATCTGCCAGAGGTTGTTCTTGCCAACT GCTGAAAGAGTTTATCTCTTCAAGGGTGTTTCCAGGGAGATTCTCTTGCACTTGGTGGCTAAGATGAAAGCCGAATACATTCCTCCACGTGAAGATGTCA TTATGCAGAACGAAGCACCTGACGATCTATACATAATCGTGTCAGGAGAAGTCGAGATAATCGACTGTGATCTTGATAAGGAGTTGGTTGTTGGGAGTTT GCAAAGTGGAGAGATGTTTGGAGAAGTTGGAGGTTTGTGTTGTAGGCCTCAGAGCTTCACTTTCAGGACCAGGACTATTTCACAGCTTTTGAGGCTGAAA ACTAGTGCTCTTATTGAAGCAATGCACTCCAGGCAGGATGATTATGTGGCCATAATTAAGAACTTTCTCCAGCATCATAGGAAAATAAGAGATTTAAAGA TAGGTGATTTCCTGTTTGATGGTGGAGAAGAAGAAAGTACTGGTGATAGAAGTATGGCTTTCAATTTGCTCTCAGTAGCCAGTACTGGCAATGCTGCTTT CCTTGAGGAACTTCTTAAGGCAAAGTTTGATCCTGATATCGGCGACTCGAAAGGCAGAACTCCATTGCATATAGCTGCATCAAAAGGGCATGAAGAATGT GTGTTGGTACTATTAAGGCATGGATGCAACATTCACTTGAGAGATATGAGCGGCAACAATGCTTTATGGCAAGCTCTATCGTCACAACACTCATCCATCT TCAGGATATTGTACCAATTTGCAATCATGTCAGATCCAAACACTGCCGGGGATCTCTTATGCACGGCCGCCAGAAGAAATGATGTGAGCATGATGAAGGA GCTACTGAAACAAGGACTAAACGTCAACTCGAAAGATCGTCAGGGGAAATCCGCAGTGCAAATAGCCATGGCTGAAAACCACATCCAGATGCTCGATTTG CTTGTGATGAACGGTGCGGATGTTTCAAATGAAGAGTCGAACAACGAAACACAGATGACACAAGAAGAGAATGATCTCAATGTGAAGAAGAAGAAGAAGA GGAATGAAGGAGATCACGAGAATAAATCTGGCGGGTTCGATTGTGCAAGAGTGAGTATATTTAGGGGGCATCCTATTGTGAGGAAAGAAAAGGGTTGCAA GGAGGGTGGAAGGCTGATTAAGCTGCCAGATTCATTGGATGAGCTTAGACATTTTGCAGGGGAAAAATTCGGATTTGATGCAGGAAATGCAATGGTAACA AATGAGGAAGGTTCAGAGATTGACTGTATTGAAGTGATAAGAGATAATGACAAGATTTTCATAGTCGATGATCCAAGCTGCTATCTTTGA
AA sequence Show only first row Show all	>Lus10019944 pacid=23156170 polypeptide=Lus10019944 locus=Lus10019944.g ID=Lus10019944.BGIv1.0 annot-version=v1.0 MEEDDDEKKKKEKEKTVKPPTSMEEELQDEKEEGEGGEEEEENSSISLSGLSKIVLPPLGSSGNNYQNPQVSKGWIISPMDSTYRCWETFMVILVAYSAW VYPFEVAFLKSAPTPSKNLYIADSVVDVFFAVDIILTFFVAYFDSRTQLLVRKPRKIATRYLSTWFIMDVASTMPFEALGYLFTGKQQLGISFSILGLLR FWRIRRVKQFFTRLEKDIRFNYFWVRCARLLAVTLFLVHSAGCLYYLLADLYPHQGKTWVGSLIPNYRETSVWMRYIAAMYWSITTMTTVGYGDLHAVNA MEMIFIIFYMLFNLGLTAYIIGNMTNLVVEGTRRTMEFRNSIEAASNFVSRNRLPPRLKEQILAYMCLKFKAESLNQHQLMEQLPKSICKSICQRLFLPT AERVYLFKGVSREILLHLVAKMKAEYIPPREDVIMQNEAPDDLYIIVSGEVEIIDCDLDKELVVGSLQSGEMFGEVGGLCCRPQSFTFRTRTISQLLRLK TSALIEAMHSRQDDYVAIIKNFLQHHRKIRDLKIGDFLFDGGEEESTGDRSMAFNLLSVASTGNAAFLEELLKAKFDPDIGDSKGRTPLHIAASKGHEEC VLVLLRHGCNIHLRDMSGNNALWQALSSQHSSIFRILYQFAIMSDPNTAGDLLCTAARRNDVSMMKELLKQGLNVNSKDRQGKSAVQIAMAENHIQMLDL LVMNGADVSNEESNNETQMTQEENDLNVKKKKKRNEGDHENKSGGFDCARVSIFRGHPIVRKEKGCKEGGRLIKLPDSLDELRHFAGEKFGFDAGNAMVT NEEGSEIDCIEVIRDNDKIFIVDDPSCYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	0	1
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	1.4	0.8962
AT1G77290			Glutathione S-transferase fami...		Lus10029723 [exp]	2.4	0.8930
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	3.0	0.8744
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	3.5	0.8931
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10036167 [exp]	4.9	0.8870
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	8.4	0.8566
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	8.7	0.8544
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	8.9	0.8384
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	9.4	0.8671
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10005619 [exp]	10.9	0.8551

Compare expression of checked genes

Lus10019944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.