Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28570 275 / 1e-91 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28600 220 / 5e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 217 / 1e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G27360 213 / 2e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28610 209 / 8e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28590 209 / 2e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G31550 207 / 8e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28640 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28650 203 / 2e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 195 / 2e-59 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015476 [exp] 390 / 2e-133 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 246 / 1e-77 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10013938 [exp] 223 / 6e-70 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 220 / 4e-69 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10024085 [exp] 192 / 4e-58 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 181 / 4e-54 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011338 [exp] 136 / 3e-37 AT1G28600 177 / 3e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 136 / 2e-35 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034763 [exp] 129 / 3e-34 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 254 / 3e-82 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G064100 [exp] 233 / 3e-76 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G054400 [exp] 189 / 3e-57 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024966 [exp] 162 / 4e-47 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 162 / 4e-47 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 160 / 4e-46 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 159 / 9e-46 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024300 [exp] 152 / 3e-43 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 129 / 1e-34 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.015G089700 [exp] 122 / 6e-32 AT3G48460 478 / 2e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10019947 pacid=23156195 polypeptide=Lus10019947 locus=Lus10019947.g ID=Lus10019947.BGIv1.0 annot-version=v1.0 ATGGCTCTAATAACAACCGTCTCTTCTTCACCGGGTCTTTTCCACACATTTTCACTGTCCGCTCTCCTCCTCCTATCAACCTTTTCTTCCCCGGCCGCCG CATCTACATGCTTCACTTCCATCATCAGCTTCGGCGATTCTATCGCCGACACAGGGAATCTCTGCCAACTTTCCCCGCCGGATCACCTCCCCCACATGTG CTTTCCTCCCTACGGCGAAACCTTCTTCCGCCGCCCCACCGGCCGCAGCTGCAACGGCCGCCGCACCTGCAACGGCCGTTTAGTCATTGACTTCATCGGG TGTAATGAGTTGTTGAGCAGCTATCTTTTTCTAATGGGAGAAATTGGAGGTAACGATTATAATTACCCACTGGAGATGAGAATGAGCTTGGAACAAGTAC AACAGCTCGTCCTTATGGTTGTCGATACTATTGGTTTGGCTATCAAGGACATAATTGAGTTAGGGGCAATACACATATTGGTTCCTGGAAATTTCCCAAT TGGATGCATACCCTTCATGCTAACCAACTTCCAGAGTTCGGACCCAGATGAATATGATCCTTCCACAGGCTGCATCACCTGGCTCAACCAGCTTGCCGAA CTCCATAACGAAATGCTCCAATCTGAACTGGATCGCCTCCGAAGACTTCATCCACATGCCAATCTAATCTATGCTGATTACTACACTCCCCTAATGCGCA TCTATCGTTCTCCGGAACAATTCGGATTTACAGGTGGAGTTCTGAAAGCATGTTGTGGAAAGGGAGGACCTTACAACTACAATACATCAATCAGCTGTGG GAACCCACTGGTGAAAGCTTGTGAAGAACCTTCCACTTATGTTAATTGGGATGGGATTCATTTCACTGAAGCTACTTATAGGCTGGTGGCCAAGTCTATT TTGGAACAAGCATCTTTCACTCTTAATGCTTCTTCTTCACCATCTAATTGTATTGCCAATGGCGCCCAATCATTCTGA
AA sequence Show only first row Show all	>Lus10019947 pacid=23156195 polypeptide=Lus10019947 locus=Lus10019947.g ID=Lus10019947.BGIv1.0 annot-version=v1.0 MALITTVSSSPGLFHTFSLSALLLLSTFSSPAAASTCFTSIISFGDSIADTGNLCQLSPPDHLPHMCFPPYGETFFRRPTGRSCNGRRTCNGRLVIDFIG CNELLSSYLFLMGEIGGNDYNYPLEMRMSLEQVQQLVLMVVDTIGLAIKDIIELGAIHILVPGNFPIGCIPFMLTNFQSSDPDEYDPSTGCITWLNQLAE LHNEMLQSELDRLRRLHPHANLIYADYYTPLMRIYRSPEQFGFTGGVLKACCGKGGPYNYNTSISCGNPLVKACEEPSTYVNWDGIHFTEATYRLVAKSI LEQASFTLNASSSPSNCIANGAQSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	0	1
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	4.2	0.7894
					Lus10010492 [exp]	5.0	0.8042
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	5.8	0.7905
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	7.4	0.7560
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10034424 [exp]	8.9	0.7571
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10028230 [exp]	9.4	0.7047
AT4G37250			Leucine-rich repeat protein ki...		Lus10014098 [exp]	11.3	0.7119
AT5G40140			RING/U-box superfamily protein...		Lus10039470 [exp]	13.9	0.7529
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10004187 [exp]	18.7	0.6358
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	18.9	0.6918

Compare expression of checked genes

Lus10019947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.