Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51990 174 / 2e-52 Protein kinase superfamily protein (.1) AT5G23170 161 / 1e-47 Protein kinase superfamily protein (.1) AT1G28390 154 / 1e-43 Protein kinase superfamily protein (.1.2) AT3G59420 157 / 3e-43 ACR4 crinkly4 (.1) AT4G02630 143 / 2e-39 Protein kinase superfamily protein (.1) AT5G47850 145 / 3e-39 CCR4 CRINKLY4 related 4 (.1) AT4G01330 141 / 6e-39 Protein kinase superfamily protein (.1.2) AT1G31420 142 / 7e-39 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT1G61860 139 / 8e-39 Protein kinase superfamily protein (.1) AT5G02800 139 / 9e-39 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015478 [exp] 367 / 3e-128 AT3G51990 169 / 2e-49 Protein kinase superfamily protein (.1) Lus10039770 [exp] 173 / 9e-51 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10016371 [exp] 166 / 5e-48 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10000764 [exp] 152 / 2e-41 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 151 / 2e-41 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10004461 [exp] 147 / 9e-41 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10029948 [exp] 146 / 2e-40 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10012995 [exp] 137 / 6e-39 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10024813 [exp] 139 / 5e-38 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G010300 [exp] 254 / 3e-83 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.004G221800 [exp] 249 / 1e-81 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.005G158600 [exp] 182 / 7e-54 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.001G260800 [exp] 165 / 2e-48 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.009G055200 [exp] 162 / 1e-46 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.017G029900 [exp] 153 / 6e-42 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 148 / 3e-40 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.014G026100 [exp] 141 / 1e-38 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 139 / 3e-38 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.011G073066 [exp] 137 / 9e-38 AT1G07650 488 / 1e-164 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019948 pacid=23156165 polypeptide=Lus10019948 locus=Lus10019948.g ID=Lus10019948.BGIv1.0 annot-version=v1.0 ATGGAGTTGTTGCCCAATGGCTCTCTTGGCGACTTGTTACACGTTGGGCCCACGACTTCACCTGGCGGTGGTCAAAGTCAACCTTTGTCGTGGGCCCAAC GCGTAGAGATTATCATCCAGCTCGCCAAGGCGGTTGAGTTTCTCCATCCGCGTGTCGTTCACAGAGACATAAAGCCTTCCAACATCTTATTCGATTCGAG TCGAAAATTAAAGCTGGTCGATTTCGGACTCGCTGTTTCACGTGTCGAAAACGACGACTCGGTGGCGACTCAACAACCGGCAGGTACCATTGGGTACATG GACCCGCATTACGCCACACATGGCAAACTAACCACGAAAGTCGACGTCTACAGTTTCGGAGTGGTTCTATTCGAGATACTCAGTGGTCGGAAGGCGATTG ACGTGGCTCGTTCCCCTGCATCGATTGTTGAATGGGCTGGGCCGTTGATCAAGAAGCAGAGGCCCATGGAGATTTGCGATCCGAAGGTGGCGTTACCTGA GTTTTTGGAGTGCACGATTAGGCACTTGGTGTATGTGGCGGCACGTTGTGTGCTGCCAAATCCCGAGGATAGGCCGGAAATGGGTGAAATCCTTTCCGGG TTGGATGGACCCGGTCGGCCGATGATTCAGGACCGAGTCAGGATGCCGAGCTGGACGGACGTGGTGAGGAGTTTCAAGCGTATGAGAATGAAGAGGAGAT TGGACAAGGATGAGAAGTTGGTCAAATGTGTAACGCAGAAGCTTGATGCTCAGAGGGATTTTTCCAATGGAAAATTGTTGTTGAGTTACTGGCAGATATA A
AA sequence Show only first row Show all	>Lus10019948 pacid=23156165 polypeptide=Lus10019948 locus=Lus10019948.g ID=Lus10019948.BGIv1.0 annot-version=v1.0 MELLPNGSLGDLLHVGPTTSPGGGQSQPLSWAQRVEIIIQLAKAVEFLHPRVVHRDIKPSNILFDSSRKLKLVDFGLAVSRVENDDSVATQQPAGTIGYM DPHYATHGKLTTKVDVYSFGVVLFEILSGRKAIDVARSPASIVEWAGPLIKKQRPMEICDPKVALPEFLECTIRHLVYVAARCVLPNPEDRPEMGEILSG LDGPGRPMIQDRVRMPSWTDVVRSFKRMRMKRRLDKDEKLVKCVTQKLDAQRDFSNGKLLLSYWQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51990			Protein kinase superfamily pro...		Lus10019948 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	4.5	0.8815
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	6.3	0.8798
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	7.3	0.8792
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	8.2	0.8655
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10025340 [exp]	8.8	0.8562
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	10.7	0.8599
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	11.0	0.8579
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	13.3	0.8532
					Lus10024213 [exp]	15.0	0.8345
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	15.9	0.8177

Compare expression of checked genes

Lus10019948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.