Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35560 75 / 1e-14 TCP TCP23 TCP family transcription factor (.1) AT1G58100 75 / 1e-14 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT1G72010 69 / 1e-12 TCP TCP22 TCP family transcription factor (.1) AT1G69690 60 / 1e-09 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT3G47620 58 / 5e-09 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT5G23280 55 / 3e-08 TCP TCP7 TCP family transcription factor (.1) AT5G08330 50 / 8e-07 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT2G45680 45 / 5e-05 TCP TCP9 TCP family transcription factor (.1) AT5G51910 44 / 8e-05 TCP TCP19 TCP family transcription factor (.1.2) AT3G27010 43 / 0.0002 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015479 [exp] 158 / 5e-47 AT1G58100 66 / 3e-13 TCP domain protein 8, TCP family transcription factor (.1.2) Lus10008444 [exp] 74 / 3e-16 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2) Lus10037190 [exp] 74 / 5e-14 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10008621 [exp] 70 / 3e-13 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10042195 [exp] 63 / 8e-11 AT3G47620 84 / 9e-18 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10010177 [exp] 49 / 2e-06 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10035193 [exp] 44 / 0.0001 AT3G27010 156 / 6e-47 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10032022 [exp] 44 / 0.0001 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10037046 [exp] 42 / 0.0001 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222100 [exp] 100 / 2e-22 AT1G58100 172 / 4e-48 TCP domain protein 8, TCP family transcription factor (.1.2) Potri.013G110700 [exp] 74 / 2e-14 AT1G35560 224 / 9e-70 TCP family transcription factor (.1) Potri.019G081800 [exp] 74 / 5e-14 AT1G72010 220 / 5e-68 TCP family transcription factor (.1) Potri.004G046300 [exp] 60 / 1e-09 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.011G055500 [exp] 60 / 1e-09 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.005G090300 [exp] 57 / 4e-09 AT5G23280 169 / 9e-52 TCP family transcription factor (.1) Potri.007G074028 [exp] 57 / 5e-09 AT5G23280 196 / 3e-62 TCP family transcription factor (.1) Potri.015G138200 [exp] 46 / 3e-05 AT5G51910 230 / 1e-73 TCP family transcription factor (.1.2) Potri.012G135900 [exp] 46 / 3e-05 AT5G51910 219 / 1e-69 TCP family transcription factor (.1.2) Potri.014G078500 [exp] 45 / 4e-05 AT2G45680 257 / 1e-83 TCP family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10019949 pacid=23156219 polypeptide=Lus10019949 locus=Lus10019949.g ID=Lus10019949.BGIv1.0 annot-version=v1.0 ATGGAGCTCACCGATTTACAGAACAACAACAACAACAACAACTCCAATAAGCAGCAGCAGCAACAACAACAACCAAACAACAACTCCTCTCAAGAACCTC ACCACCACCCCCACCACCACCTTCAGTACCAACAGTTCCGCTTCGATGGAAGATCACCCATCGGCGGCGGCGGAGGAGGCGGAGGCGGACCGTCTCACAG TCCTTTCATGGGGTCCATCTCCTTCCAGCCAGTTTCCATGTCTCGTCCTCCTCTCCACCTTCAACAACATACTTCGACTTCTTCTTCTTCCTCCTCTTCT CCTTCTACAACACCTTCTTCCTCCGCCCCCAGTCCTCACCTCGTCGACGCCTCCCTCGCCATTTCAACCAGATCTGGCTCTTTACCTTCCGATTCCACTG CTCATAAACAGATTAATGAACAGTCCACTAATCATCACAACCTTGCTATTGTGCCGGCGGCCACCAACACCACCACGGCTGGGGGCGGGGGACCGAAAGA GGCGGGCAAAGATAGAGAAAATATATTCGTGGGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNGTGAGACGATTGAGGGGCTGCTCCAGCAAGCTGAGCCGGCAATTATTGCGGCTACTGGAACGGGAACGATTCCGG CCAATTTCTCCACCTTGAATGTCTCGTTGAGGAGCAGTGGATCTACGCTCTCTGCTCCTGCTTCGAAATCTGCTCCTCACTCTTTCCATGCGGCGGCAGC GGCGGGTCCGACCGAAGCTCAGATGTGGCCGTTTTCAACGAGTGCGGGGAACACGCCGCCGATTCAGGCGCCGTTACATTTTATGCCGAGATTCAACCTG TCGCCGCAGAATCTAGATTTCCAAGGCGGTAGAGCAAGTCCTTTACAGCTGGGGTCGATGGTGATGCCACCGCCACCGACAACGCAGGCGCCGTCGCAGC ATTTGGGGCTGGGAATGTCCGAATCGAATTTGGGGATGTTAGCTGCATTGAACGCTTACTCCAGAGGCGGGCTAAATGCCAGTTCCGAGCACAGTCATCA TCATCACCACCAACAACAACAGCAGCAAACGAATAGTGAAAATGATGATGATGAAGAAGAAGATCCGAATAGTTCGCAGTGA
AA sequence Show only first row Show all	>Lus10019949 pacid=23156219 polypeptide=Lus10019949 locus=Lus10019949.g ID=Lus10019949.BGIv1.0 annot-version=v1.0 MELTDLQNNNNNNNSNKQQQQQQQPNNNSSQEPHHHPHHHLQYQQFRFDGRSPIGGGGGGGGGPSHSPFMGSISFQPVSMSRPPLHLQQHTSTSSSSSSS PSTTPSSSAPSPHLVDASLAISTRSGSLPSDSTAHKQINEQSTNHHNLAIVPAATNTTTAGGGGPKEAGKDRENIFVGRXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXETIEGLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPASKSAPHSFHAAAAAGPTEAQMWPFSTSAGNTPPIQAPLHFMPRFNL SPQNLDFQGGRASPLQLGSMVMPPPPTTQAPSQHLGLGMSESNLGMLAALNAYSRGGLNASSEHSHHHHHQQQQQQTNSENDDDEEEDPNSSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10019949 [exp]	0	1
AT1G79070			SNARE-associated protein-relat...		Lus10031217 [exp]	4.4	0.7735
AT5G03500			Mediator complex, subunit Med7...		Lus10016217 [exp]	10.6	0.7797
AT1G79060			unknown protein		Lus10031795 [exp]	17.1	0.8125
AT4G36970			Remorin family protein (.1)		Lus10039007 [exp]	22.8	0.7929
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026140 [exp]	25.1	0.7740
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10036348 [exp]	28.5	0.7834
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	30.4	0.7354
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	36.2	0.7938
AT1G21320			nucleotide binding;nucleic aci...		Lus10028599 [exp]	43.1	0.6914
AT3G50620			P-loop containing nucleoside t...		Lus10009348 [exp]	50.1	0.7821

Compare expression of checked genes

Lus10019949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.